BiocGenerics

This is the development version of BiocGenerics; for the stable release version, see BiocGenerics.

S4 generic functions used in Bioconductor

Bioconductor version: Development (3.23)

The package defines many S4 generic functions used in Bioconductor.

Author: The Bioconductor Dev Team [aut], Hervé Pagès [aut, cre] ORCID: 0009-0002-8272-4522 , Laurent Gatto [ctb] ORCID: 0000-0002-1520-2268 , Nathaniel Hayden [ctb], James Hester [ctb], Wolfgang Huber [ctb], Michael Lawrence [ctb], Martin Morgan [ctb] ORCID: 0000-0002-5874-8148 , Valerie Obenchain [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("BiocGenerics")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	0.57.0
In Bioconductor since	BioC 2.10 (R-2.15) (13.5 years)
License	Artistic-2.0
Depends	R (>= 4.0.0), methods, utils, graphics, stats, generics
Imports	methods, utils, graphics, stats
System Requirements
URL	https://bioconductor.org/packages/BiocGenerics
Bug Reports	https://github.com/Bioconductor/BiocGenerics/issues

Suggests	Biobase, S4Vectors, IRanges, S4Arrays, SparseArray, DelayedArray, HDF5Array, GenomicRanges, pwalign, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2, flowClust, MSnbase, annotate, MultiAssayExperiment, RUnit
Linking To
Enhances
Depends On Me	ACME, Biobase, Cardinal, graph, multtest, rsbml, S4Vectors, UNDO, updateObject, ChAMPdata, liftOver, rsolr
Imports Me	BiocBook, BiocHail, BiocIO, BrowserViz, ChemmineOB, ddCt, DFplyr, EBImage, EnrichDO, FamAgg, flowBin, flowClust, flowCore, flowFP, FlowSOM, flowSpecs, geneClassifiers, hopach, IHW, KCsmart, matter, monocle, mzR, parglms, pcaMethods, profileScoreDist, RCy3, RCyjs, RGSEA, RNAseqCovarImpute, rqubic, rsbml, SharedObject, snpStats, unifiedWMWqPCR, uSORT, CENTREannotation, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, CENTREprecomputed, curatedOvarianData, gDNAinRNAseqData, IHWpaper, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, microbiomeDataSets, MouseGastrulationData, MouseThymusAgeing, raerdata, scRNAseq, spatialLIBD, systemPipeRdata, TENxBUSData, VariantToolsData, ExpHunterSuite, GeoMxWorkflows, crispRdesignR, DCLEAR, decompDL, EEMDlstm, geno2proteo, HiCociety, hicream, locuszoomr, RNAseqQC, scPOEM, Signac, TaxaNorm, toxpiR, treediff, TSdeeplearning
Suggests Me	acde, AlphaMissenseR, ASSET, BiocParallel, BiocStyle, biocViews, CausalR, ccrepe, cellmigRation, clustComp, CNORfeeder, CNORfuzzy, consensus, COSNet, DNAcycP2, fgga, flowCut, flowTime, fmrs, GateFinder, gdsfmt, GEM, GeneNetworkBuilder, GeneOverlap, geNetClassifier, GWASTools, hierGWAS, HIREewas, hypergraph, iCARE, iClusterPlus, illuminaio, immunotation, INPower, massiR, MBttest, Mergeomics, miRBaseConverter, miRcomp, mnem, mosbi, multiClust, MultiMed, Path2PPI, PathNet, pepXMLTab, powerTCR, RBGL, rBiopaxParser, rcellminer, REBET, RGraph2js, Rgraphviz, ROSeq, scLANE, sigsquared, SIMAT, similaRpeak, SIMLR, SNPRelate, specL, STRINGdb, SUITOR, TIN, TreeAndLeaf, tripr, TRONCO, variancePartition, VERSO, ENCODExplorerData, geneplast.data, ConnectivityMap, FieldEffectCrc, grndata, HarmanData, healthyControlsPresenceChecker, microRNAome, RegParallel, scMultiome, sesameData, adjclust, aroma.affymetrix, ggpicrust2, gkmSVM, GSEMA, inDAGO, MarZIC, NutrienTrackeR, pagoda2, Platypus, polyRAD, Rediscover, Seurat
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocGenerics_0.57.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BiocGenerics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocGenerics
Bioc Package Browser	https://code.bioconductor.org/browse/BiocGenerics/
Package Short Url	https://bioconductor.org/packages/BiocGenerics/
Package Downloads Report	Download Stats