graph
This is the development version of graph; for the stable release version, see graph.
graph: A package to handle graph data structures
Bioconductor version: Development (3.23)
A package that implements some simple graph handling capabilities.
Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("graph")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("graph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graph")| Attributes for Graph Objects | HTML | R Script |
| clusterGraph and distGraph | HTML | R Script |
| Graph Design | HTML | R Script |
| graphBAM and MultiGraph Classes | HTML | R Script |
| How to use the graph package | HTML | R Script |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Software |
| Version | 1.89.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 20.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, BiocGenerics(>= 0.13.11) |
| Imports | stats, stats4, utils |
| System Requirements | |
| URL |
See More
| Suggests | SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle, knitr |
| Linking To | |
| Enhances | Rgraphviz |
| Depends On Me | BioMVCClass, CellNOptR, CNORfeeder, GraphAT, hypergraph, RbcBook1, RBGL, RCyjs, Rgraphviz, SRAdb, DLBCL, SNAData, cyjShiny, dlsem, graphpcor, gridGraphviz, PairViz, PerfMeas |
| Imports Me | BiocFHIR, biocViews, EnrichDO, fgga, flowClust, GeneNetworkBuilder, GraphAT, hyperdraw, mnem, netresponse, OncoSimulR, RCy3, RGraph2js, rsbml, BioPlex, abn, BayesNetBP, BCDAG, BiDAG, BNrich, ceg, CePa, classGraph, clustNet, CodeDepends, cogmapr, ggm, gridDebug, HEMDAG, net4pg, netgsa, NetPreProc, pcalg, pcgen, rags2ridges, RANKS, RCPA, rsolr, rSpectral, SEMgraph, stablespec, topologyGSA, tpc, unifDAG |
| Suggests Me | EBcoexpress, NetPathMiner, rBiopaxParser, RCX, S4Vectors, arulesViz, bnlearn, bnstruct, bsub, ChoR, gbutils, GeneNet, gMCP, lava, loon, maGUI, netmeta, psych, rEMM, rPref, sisal, textplot, tidygraph, zenplots |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | graph_1.89.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/graph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/graph |
| Bioc Package Browser | https://code.bioconductor.org/browse/graph/ |
| Package Short Url | https://bioconductor.org/packages/graph/ |
| Package Downloads Report | Download Stats |