AnnotationDbi
This is the development version of AnnotationDbi; for the stable release version, see AnnotationDbi.
Manipulation of SQLite-based annotations in Bioconductor
Bioconductor version: Development (3.23)
Implements a user-friendly interface for querying SQLite-based annotation data packages.
Author: Hervé Pagès, Marc Carlson, Seth Falcon, Nianhua Li
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("AnnotationDbi")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AnnotationDbi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| Video |
Details
| biocViews | Annotation, GenomeAnnotation, Microarray, Sequencing, Software |
| Version | 1.73.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (18 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.7.0), methods, stats4, BiocGenerics(>= 0.29.2), Biobase(>= 1.17.0), IRanges |
| Imports | DBI, RSQLite, S4Vectors(>= 0.9.25), stats, KEGGREST |
| System Requirements | |
| URL | https://bioconductor.org/packages/AnnotationDbi |
| Bug Reports | https://github.com/Bioconductor/AnnotationDbi/issues |
See More
| Suggests | utils, hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/AnnotationDbi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationDbi |
| Package Short Url | https://bioconductor.org/packages/AnnotationDbi/ |
| Package Downloads Report | Download Stats |