PETScMatrix.h

// Copyright (C) 2004-2012 Johan Hoffman, Johan Jansson, Anders Logg
// and Garth N. Wells
//
// This file is part of DOLFIN.
//
// DOLFIN is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// DOLFIN is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
// Modified by Andy R. Terrel 2005
// Modified by Garth N. Wells 2006-2009
// Modified by Kent-Andre Mardal 2008
// Modified by Ola Skavhaug 2008
// Modified by Fredrik Valdmanis 2011
//
// First added:  2004-01-01
// Last changed: 2012-08-22
 
#ifndef __PETSC_MATRIX_H
#define __PETSC_MATRIX_H
 
#ifdef HAS_PETSC
 
#include <map>
#include <memory>
#include <string>
 
#include <petscmat.h>
#include <petscsys.h>
 
#include "GenericMatrix.h"
#include "PETScBaseMatrix.h"
 
namespace dolfin
{
 
  class PETScVector;
  class TensorLayout;
  class VectorSpaceBasis;

 
  class PETScMatrix : public GenericMatrix, public PETScBaseMatrix
  {
  public:

    PETScMatrix();

    explicit PETScMatrix(MPI_Comm comm);

    explicit PETScMatrix(Mat A);

    PETScMatrix(const PETScMatrix& A);

    virtual ~PETScMatrix();
 
    //--- Implementation of the GenericTensor interface ---

    void init(const TensorLayout& tensor_layout);

    bool empty() const;

    std::size_t size(std::size_t dim) const
    { return PETScBaseMatrix::size(dim); }

    std::pair<std::int64_t, std::int64_t> local_range(std::size_t dim) const
    { return PETScBaseMatrix::local_range(dim); }

    std::size_t nnz() const;

    virtual void zero();

    virtual void apply(std::string mode);

    MPI_Comm mpi_comm() const;

    virtual std::string str(bool verbose) const;
 
    //--- Implementation of the GenericMatrix interface --

    virtual std::shared_ptr<GenericMatrix> copy() const;

    virtual void init_vector(GenericVector& z, std::size_t dim) const
    { PETScBaseMatrix::init_vector(z, dim); }

    virtual void get(double* block,
                     std::size_t m, const dolfin::la_index* rows,
                     std::size_t n, const dolfin::la_index* cols) const;

    virtual void set(const double* block,
                     std::size_t m, const dolfin::la_index* rows,
                     std::size_t n, const dolfin::la_index* cols);

    virtual void set_local(const double* block,
                           std::size_t m, const dolfin::la_index* rows,
                           std::size_t n, const dolfin::la_index* cols);

    virtual void add(const double* block,
                     std::size_t m, const dolfin::la_index* rows,
                     std::size_t n, const dolfin::la_index* cols);

    virtual void add_local(const double* block,
                           std::size_t m, const dolfin::la_index* rows,
                           std::size_t n, const dolfin::la_index* cols);

    virtual void axpy(double a, const GenericMatrix& A,
                      bool same_nonzero_pattern);

    double norm(std::string norm_type) const;

    virtual void getrow(std::size_t row,
                        std::vector<std::size_t>& columns,
                        std::vector<double>& values) const;

    virtual void setrow(std::size_t row,
                        const std::vector<std::size_t>& columns,
                        const std::vector<double>& values);

    virtual void zero(std::size_t m, const dolfin::la_index* rows);

    virtual void zero_local(std::size_t m, const dolfin::la_index* rows);

    virtual void ident(std::size_t m, const dolfin::la_index* rows);

    virtual void ident_local(std::size_t m, const dolfin::la_index* rows);
 
    // Matrix-vector product, y = Ax
    virtual void mult(const GenericVector& x, GenericVector& y) const;
 
    // Matrix-vector product, y = A^T x
    virtual void transpmult(const GenericVector& x, GenericVector& y) const;

    virtual void get_diagonal(GenericVector& x) const;

    virtual void set_diagonal(const GenericVector& x);

    virtual const PETScMatrix& operator*= (double a);

    virtual const PETScMatrix& operator/= (double a);

    virtual const GenericMatrix& operator= (const GenericMatrix& A);

    virtual bool is_symmetric(double tol) const;
 
    //--- Special functions ---

    virtual GenericLinearAlgebraFactory& factory() const;
 
    //--- Special PETSc Functions ---

    void set_options_prefix(std::string options_prefix);

    std::string get_options_prefix() const;

    void set_from_options();

    const PETScMatrix& operator= (const PETScMatrix& A);

    void set_nullspace(const VectorSpaceBasis& nullspace);

    void set_near_nullspace(const VectorSpaceBasis& nullspace);

    void binary_dump(std::string file_name) const;
 
  private:
 
    // Create PETSc nullspace object
    MatNullSpace create_petsc_nullspace(const VectorSpaceBasis& nullspace) const;
 
    // PETSc norm types
    static const std::map<std::string, NormType> norm_types;
 
  };
 
}
 
#endif
 
#endif