Class CellImgRangeCopier<T>

java.lang.Object

net.imglib2.blocks.CellImgRangeCopier<T>

Type Parameters:

T - a primitive array type, e.g., byte[].

All Implemented Interfaces:

RangeCopier<T>

class CellImgRangeCopier<T>
extends Object
implements RangeCopier<T>

Does the actual copying work from an AbstractCellImg into a primitive array.

Field Summary

Fields

Modifier and Type	Field	Description
private final int[]	cdims
private final RandomAccess<? extends Cell<?>>	cellAccess
private final CellGrid	cellGrid
private final int[]	csteps
private final int[]	doffsets
private final int[]	dsteps
private final Ranges	findRanges
private final int[]	lengths
private final MemCopy<T>	memCopy
private final int	n
private final T	oob
private final Ranges.Range[]	ranges
private final List<Ranges.Range>[]	rangesPerDimension
private final long[]	srcDims

Constructor Summary

Constructors

Modifier	Constructor	Description
private	CellImgRangeCopier(CellImgRangeCopier<T> copier)
	CellImgRangeCopier(AbstractCellImg<?,?,?,?> cellImg, Ranges findRanges, MemCopy<T> memCopy, T oob)

Method Summary

Modifier and Type	Method	Description
void	copy(long[] srcPos, T dest, int[] size)	Copy the block starting at srcPos with the given size into the (appropriately sized) dest array.
private void	copy(T dest, int d)	Iterates the rangesPerDimension list for the given dimension d and recursively calls itself for iterating dimension d-1.
private void	copyRanges(T dest)	Once we get here, setupDestSize(int[]) and updateRange(int) for all dimensions have been called, so the dsteps, doffsets, cdims, and lengths fields have been appropriately set up for the current Range combination.
private void	copyRangesRecursively(T src, int srcPos, T dest, int destPos, int d)
(package private) void	fillRanges(T dest, int dConst)	Once we get here, setupDestSize(int[]) and updateRange(int) for all dimensions have been called, so the dsteps, doffsets, cdims, and lengths fields have been appropriately set up for the current Range combination.
private void	fillRangesRecursively(T dest, int destPos, int d, int dConst)
CellImgRangeCopier<T>	newInstance()	Return a new independent instance of this RangeCopier.
private void	setupDestSize(int[] size)
private void	updateRange(int d)

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

n

private final int n

cellGrid

private final CellGrid cellGrid

cellAccess

private final RandomAccess<? extends Cell<?>> cellAccess

srcDims

private final long[] srcDims

findRanges

private final Ranges findRanges

memCopy

private final MemCopy<T> memCopy

oob

private final T oob

rangesPerDimension

private final List<Ranges.Range>[] rangesPerDimension

ranges

private final Ranges.Range[] ranges

dsteps

private final int[] dsteps

doffsets

private final int[] doffsets

cdims

private final int[] cdims

csteps

private final int[] csteps

lengths

private final int[] lengths

Constructor Details

CellImgRangeCopier

public CellImgRangeCopier(AbstractCellImg<?,?,?,?> cellImg,
 Ranges findRanges,
 MemCopy<T> memCopy,
 T oob)

CellImgRangeCopier

private CellImgRangeCopier(CellImgRangeCopier<T> copier)

Method Details

newInstance

public CellImgRangeCopier<T> newInstance()

Description copied from interface: RangeCopier

Return a new independent instance of this RangeCopier. This is used for multi-threading. The new instance works on the same source image, but has independent internal state.

Specified by:

newInstance in interface RangeCopier<T>

Returns:

new independent instance of this RangeCopier

copy

public void copy(long[] srcPos,
 T dest,
 int[] size)

Copy the block starting at srcPos with the given size into the (appropriately sized) dest array.

This finds the src range lists for all dimensions and then calls copy(Object, int) to iterate all range combinations.

Specified by:

copy in interface RangeCopier<T>

Parameters:

srcPos - min coordinates of block to copy from src Img.

dest - destination array. Type is byte[], float[], etc, corresponding to the src Img's native type.

size - dimensions of block to copy from src Img.

copy

private void copy(T dest,
 int d)

Iterates the rangesPerDimension list for the given dimension d and recursively calls itself for iterating dimension d-1.

Parameters:

dest - destination array. Type is byte[], float[], etc, corresponding to the src Img's native type.

d - current dimension. This method calls itself recursively with d-1 until d==0 is reached.

setupDestSize

private void setupDestSize(int[] size)

updateRange

private void updateRange(int d)

copyRanges

private void copyRanges(T dest)

Once we get here, setupDestSize(int[]) and updateRange(int) for all dimensions have been called, so the dsteps, doffsets, cdims, and lengths fields have been appropriately set up for the current Range combination. Also cellAccess is positioned on the corresponding cell.

copyRangesRecursively

private void copyRangesRecursively(T src,
 int srcPos,
 T dest,
 int destPos,
 int d)

fillRanges

void fillRanges(T dest,
 int dConst)

Once we get here, setupDestSize(int[]) and updateRange(int) for all dimensions have been called, so the dsteps, doffsets, cdims, and lengths fields have been appropriately set up for the current Range combination. Also cellAccess is positioned on the corresponding cell.

fillRangesRecursively

private void fillRangesRecursively(T dest,
 int destPos,
 int d,
 int dConst)