Package net.imglib2.view

Class StackView.MoveAllSlicesRA<T>

java.lang.Object

net.imglib2.view.StackView.MoveAllSlicesRA<T>

Type Parameters:

T - the pixel type

All Implemented Interfaces:

EuclideanSpace, Localizable, Positionable, RandomAccess<T>, RealLocalizable, Sampler<T>, Typed<T>

Enclosing class:

StackView<T>

public static class StackView.MoveAllSlicesRA<T>
extends java.lang.Object
implements RandomAccess<T>

A RandomAccess on a StackView. It keeps a list of RandomAccesses on all constituent hyper-slices of the StackView.

When changing any dimension of the position, except the (n+1)th, this position change is applied to the all slice RandomAccesses. The current (n+1)th dimension of the position is maintained as an index. When get() is called it is forwarded to the slice RandomAccess at that index.

The potential advantage of this approach is that it does not need to do a full setPosition() when changing slices.This is faster assuming that we access in a loop over dimensions with the last dimension (the hyper-slice dimension) in the inner loop.

Only use this if you know what you are doing.

Field Summary

Fields

Modifier and Type	Field	Description
private int	n
private int	sd
private int	slice
private RandomAccess<T>[]	sliceAccesses
private int[]	tmpInt
private long[]	tmpLong

Constructor Summary

Constructors

Modifier	Constructor	Description
	MoveAllSlicesRA(RandomAccessibleInterval<T>[] slices)
	MoveAllSlicesRA(RandomAccessibleInterval<T>[] slices, Interval interval)
private	MoveAllSlicesRA(StackView.MoveAllSlicesRA<T> a)

Method Summary

Modifier and Type	Method	Description
void	bck(int d)	Move by -1 in one dimension.
StackView.MoveAllSlicesRA<T>	copy()
void	fwd(int d)	Move by 1 in one dimension.
T	get()	Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
double	getDoublePosition(int d)	Return the current position in a given dimension.
float	getFloatPosition(int d)	Return the current position in a given dimension.
int	getIntPosition(int d)	Return the current position in a given dimension.
long	getLongPosition(int d)	Return the current position in a given dimension.
T	getType()	Get an instance of T.
void	localize(double[] position)	Write the current position into the passed array.
void	localize(float[] position)	Write the current position into the passed array.
void	localize(int[] position)	Write the current position into the passed array.
void	localize(long[] position)	Write the current position into the passed array.
void	move(int[] distance)	Move the element relative to its current location using an int[] as distance vector.
void	move(int distance, int d)	Move the element in one dimension for some distance.
void	move(long[] distance)	Move the element relative to its current location using a long[] as distance vector.
void	move(long distance, int d)	Move the element in one dimension for some distance.
void	move(Localizable distance)	Move the element relative to its current location using an Localizable as distance vector.
int	numDimensions()	Gets the space's number of dimensions.
void	setPosition(int[] position)	Set the position of the element.
void	setPosition(int position, int d)	Set the position of the element for one dimension.
void	setPosition(long[] position)	Set the position of the element.
void	setPosition(long position, int d)	Set the position of the element for one dimension.
void	setPosition(Localizable position)	Place the element at the same location as a given Localizable

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.Localizable

localize, localize, positionAsLongArray, positionAsPoint

Methods inherited from interface net.imglib2.RandomAccess

copyRandomAccess, setPositionAndGet, setPositionAndGet, setPositionAndGet

Methods inherited from interface net.imglib2.RealLocalizable

positionAsDoubleArray, positionAsRealPoint

Field Detail

n

private final int n

sd

private final int sd

slice

private int slice

tmpLong

private final long[] tmpLong

tmpInt

private final int[] tmpInt

sliceAccesses

private final RandomAccess<T>[] sliceAccesses

Constructor Detail

MoveAllSlicesRA

public MoveAllSlicesRA(RandomAccessibleInterval<T>[] slices)

MoveAllSlicesRA

public MoveAllSlicesRA(RandomAccessibleInterval<T>[] slices,
                       Interval interval)

MoveAllSlicesRA

private MoveAllSlicesRA(StackView.MoveAllSlicesRA<T> a)

Method Detail

localize

public void localize(int[] position)

Description copied from interface: Localizable

Write the current position into the passed array.

Specified by:

localize in interface Localizable

Parameters:

position - receives current position, length must be ≥ EuclideanSpace.numDimensions()

localize

public void localize(long[] position)

Description copied from interface: Localizable

Write the current position into the passed array.

Specified by:

localize in interface Localizable

Parameters:

position - receives current position, length must be ≥ EuclideanSpace.numDimensions()

getIntPosition

public int getIntPosition(int d)

Description copied from interface: Localizable

Return the current position in a given dimension.

Specified by:

getIntPosition in interface Localizable

Parameters:

d - dimension

Returns:

dimension of current position

getLongPosition

public long getLongPosition(int d)

Description copied from interface: Localizable

Return the current position in a given dimension.

Specified by:

getLongPosition in interface Localizable

Parameters:

d - dimension

Returns:

dimension of current position

localize

public void localize(float[] position)

Description copied from interface: RealLocalizable

Write the current position into the passed array.

Specified by:

localize in interface RealLocalizable

Parameters:

position - receives current position, length must be ≥ EuclideanSpace.numDimensions()

localize

public void localize(double[] position)

Description copied from interface: RealLocalizable

Write the current position into the passed array.

Specified by:

localize in interface RealLocalizable

Parameters:

position - receives current position, length must be ≥ EuclideanSpace.numDimensions()

getFloatPosition

public float getFloatPosition(int d)

Description copied from interface: RealLocalizable

Return the current position in a given dimension.

Specified by:

getFloatPosition in interface Localizable

Specified by:

getFloatPosition in interface RealLocalizable

Parameters:

d - dimension

Returns:

dimension of current position

getDoublePosition

public double getDoublePosition(int d)

Description copied from interface: RealLocalizable

Return the current position in a given dimension.

Specified by:

getDoublePosition in interface Localizable

Specified by:

getDoublePosition in interface RealLocalizable

Parameters:

d - dimension

Returns:

dimension of current position

numDimensions

public int numDimensions()

Description copied from interface: EuclideanSpace

Gets the space's number of dimensions.

Specified by:

numDimensions in interface EuclideanSpace

fwd

public void fwd(int d)

Description copied from interface: Positionable

Move by 1 in one dimension.

Specified by:

fwd in interface Positionable

Parameters:

d - dimension

bck

public void bck(int d)

Description copied from interface: Positionable

Move by -1 in one dimension.

Specified by:

bck in interface Positionable

Parameters:

d - dimension

move

public void move(int distance,
                 int d)

Description copied from interface: Positionable

Move the element in one dimension for some distance.

Specified by:

move in interface Positionable

Parameters:

distance - relative offset in dimension d

d - dimension

move

public void move(long distance,
                 int d)

Description copied from interface: Positionable

Move the element in one dimension for some distance.

Specified by:

move in interface Positionable

Parameters:

distance - relative offset in dimension d

d - dimension

move

public void move(Localizable distance)

Description copied from interface: Positionable

Move the element relative to its current location using an Localizable as distance vector.

Specified by:

move in interface Positionable

Parameters:

distance - relative offset, EuclideanSpace.numDimensions() must be ≥ EuclideanSpace.numDimensions()

move

public void move(int[] distance)

Description copied from interface: Positionable

Move the element relative to its current location using an int[] as distance vector.

Specified by:

move in interface Positionable

Parameters:

distance - relative offset, length must be ≥ EuclideanSpace.numDimensions()

move

public void move(long[] distance)

Description copied from interface: Positionable

Move the element relative to its current location using a long[] as distance vector.

Specified by:

move in interface Positionable

Parameters:

distance - relative offset, length must be ≥ EuclideanSpace.numDimensions()

setPosition

public void setPosition(Localizable position)

Description copied from interface: Positionable

Place the element at the same location as a given Localizable

Specified by:

setPosition in interface Positionable

Parameters:

position - absolute position, EuclideanSpace.numDimensions() must be ≥ EuclideanSpace.numDimensions()

setPosition

public void setPosition(int[] position)

Description copied from interface: Positionable

Set the position of the element.

Specified by:

setPosition in interface Positionable

Parameters:

position - absolute position, length must be ≥ EuclideanSpace.numDimensions()

setPosition

public void setPosition(long[] position)

Description copied from interface: Positionable

Set the position of the element.

Specified by:

setPosition in interface Positionable

Parameters:

position - absolute position, length must be ≥ EuclideanSpace.numDimensions()

setPosition

public void setPosition(int position,
                        int d)

Description copied from interface: Positionable

Set the position of the element for one dimension.

Specified by:

setPosition in interface Positionable

Parameters:

position - absolute position in dimension d

d - dimension

setPosition

public void setPosition(long position,
                        int d)

Description copied from interface: Positionable

Set the position of the element for one dimension.

Specified by:

setPosition in interface Positionable

Parameters:

position - absolute position in dimension d

d - dimension

get

public T get()

Description copied from interface: Sampler

Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.

Specified by:

get in interface Sampler<T>

getType

public T getType()

Description copied from interface: Typed

Get an instance of T.

It should not be assumed that the returned T instance is an independent copy. In particular, repeated calls to getType() may return the same instance.

Specified by:

getType in interface Sampler<T>

Specified by:

getType in interface Typed<T>

Returns:

an instance of T

copy

public StackView.MoveAllSlicesRA<T> copy()

Specified by:

copy in interface RandomAccess<T>

Specified by:

copy in interface Sampler<T>

Returns:

- A new Sampler in the same state accessing the same values. It does NOT copy T, just the state of the Sampler. Otherwise use T.copy() if available. Sampler.copy().get() == Sampler.get(), i.e. both hold the same value, not necessarily the same instance (this is the case for an ArrayCursor for example)