Package net.imglib2.type.numeric.integer

Class GenericShortType<T extends GenericShortType<T>>

java.lang.Object

net.imglib2.type.numeric.complex.AbstractComplexType<T>

net.imglib2.type.numeric.real.AbstractRealType<T>

net.imglib2.type.numeric.integer.AbstractIntegerType<T>

net.imglib2.type.numeric.integer.GenericShortType<T>

All Implemented Interfaces:

java.lang.Comparable<T>, NativeType<T>, ComplexType<T>, IntegerType<T>, NumericType<T>, RealType<T>, Add<T>, Div<T>, Mul<T>, MulFloatingPoint, Pow<T>, PowFloatingPoint, SetOne, SetZero, Sub<T>, ValueEquals<T>, Type<T>

Direct Known Subclasses:

ShortType, UnsignedShortType

public abstract class GenericShortType<T extends GenericShortType<T>>
extends AbstractIntegerType<T>
implements NativeType<T>

Abstract base class for native IntegerTypes that encode their value into a 16bit short.

Field Summary

Fields

Modifier and Type	Field	Description
protected ShortAccess	dataAccess
(package private) Index	i
protected NativeImg<?,? extends ShortAccess>	img

Constructor Summary

Constructors

Constructor	Description
GenericShortType()
GenericShortType(short value)
GenericShortType(ShortAccess access)
GenericShortType(NativeImg<?,? extends ShortAccess> shortStorage)

Method Summary

Modifier and Type	Method	Description
void	add(T c)
int	compareTo(T other)
void	dec()
void	div(T c)
boolean	equals(java.lang.Object obj)
int	getBitsPerPixel()
Fraction	getEntitiesPerPixel()	Get the number of entities in the storage array required to store one pixel value.
abstract NativeTypeFactory<T,ShortAccess>	getNativeTypeFactory()
short	getShort()	Returns the primitive short value that is used to store this type.
protected short	getValue()	Deprecated. Use getShort() instead.
int	hashCode()
void	inc()
Index	index()	Get the (modifiable) index into the current data array.
void	mul(double c)
void	mul(float c)
void	mul(T c)
void	set(T c)	Sets the value of another Type.
void	setOne()
void	setShort(short f)	Sets the primitive short value that is used to store this type.
protected void	setValue(short f)	Deprecated. Use setShort(short) instead.
void	setZero()
void	sub(T c)
java.lang.String	toString()
void	updateContainer(java.lang.Object c)	This method is used by an accessor (e.g., a Cursor) to request an update of the current data array.
boolean	valueEquals(T t)

Methods inherited from class net.imglib2.type.numeric.integer.AbstractIntegerType

getMinIncrement, getRealDouble, getRealFloat, setReal, setReal

Methods inherited from class net.imglib2.type.numeric.real.AbstractRealType

getImaginaryDouble, getImaginaryFloat, getPhaseDouble, getPhaseFloat, getPowerDouble, getPowerFloat, pow, pow, setImaginary, setImaginary

Methods inherited from class net.imglib2.type.numeric.complex.AbstractComplexType

complexConjugate, setComplexNumber, setComplexNumber

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.imglib2.type.numeric.ComplexType

complexConjugate, getImaginaryDouble, getImaginaryFloat, getPhaseDouble, getPhaseFloat, getPowerDouble, getPowerFloat, setComplexNumber, setComplexNumber, setImaginary, setImaginary

Methods inherited from interface net.imglib2.type.numeric.IntegerType

getBigInteger, getInteger, getIntegerLong, setBigInteger, setInteger, setInteger

Methods inherited from interface net.imglib2.type.NativeType

decIndex, decIndex, duplicateTypeOnSameNativeImg, getIndex, incIndex, incIndex, updateIndex

Methods inherited from interface net.imglib2.type.operators.Pow

pow

Methods inherited from interface net.imglib2.type.operators.PowFloatingPoint

pow

Methods inherited from interface net.imglib2.type.numeric.RealType

getMaxValue, getMinValue

Methods inherited from interface net.imglib2.type.Type

copy, createVariable

Field Detail

i

final Index i

img

protected final NativeImg<?,? extends ShortAccess> img

dataAccess

protected ShortAccess dataAccess

Constructor Detail

GenericShortType

public GenericShortType(NativeImg<?,? extends ShortAccess> shortStorage)

GenericShortType

public GenericShortType(short value)

GenericShortType

public GenericShortType(ShortAccess access)

GenericShortType

public GenericShortType()

Method Detail

getEntitiesPerPixel

public Fraction getEntitiesPerPixel()

Description copied from interface: NativeType

Get the number of entities in the storage array required to store one pixel value. A pixel value may be spread over several or less than one entity. For example, a complex number may require 2 entries of a float[] array to store one pixel. Or a 12-bit type might need 12/64th entries of a long[] array.

Specified by:

getEntitiesPerPixel in interface NativeType<T extends GenericShortType<T>>

Returns:

the number of storage type entities required to store one pixel value.

updateContainer

public void updateContainer(java.lang.Object c)

Description copied from interface: NativeType

This method is used by an accessor (e.g., a Cursor) to request an update of the current data array.

As an example consider a CellCursor moving on a CellImg. The cursor maintains a NativeType which provides access to the image data. When the cursor moves from one cell to the next, the underlying data array of the NativeType must be switched to the data array of the new cell.

To achieve this, the CellCursor calls updateContainer() with itself as the argument. updateContainer() in turn will call NativeImg.update(Object) on it's container, passing along the reference to the cursor. In this example, the container would be a CellImg. While the NativeType does not know about the type of the cursor, the container does. CellImg knows that it is passed a CellCursor instance, which can be used to figure out the current cell and the underlying data array, which is then returned to the NativeType.

The idea behind this concept is maybe not obvious. The NativeType knows which basic type is used (float, int, byte, ...). However, it does not know how the data is stored (ArrayImg, CellImg, ...). This prevents the need for multiple implementations of NativeType .

Specified by:

updateContainer in interface NativeType<T extends GenericShortType<T>>

Parameters:

c - reference to an accessor which can be passed on to the container (which will know what to do with it).

index

public Index index()

Description copied from interface: NativeType

Get the (modifiable) index into the current data array. The returned instance will always be the same for the same Type.

Specified by:

index in interface NativeType<T extends GenericShortType<T>>

getNativeTypeFactory

public abstract NativeTypeFactory<T,ShortAccess> getNativeTypeFactory()

Specified by:

getNativeTypeFactory in interface NativeType<T extends GenericShortType<T>>

getValue

@Deprecated
protected short getValue()

Deprecated.

Use getShort() instead.

setValue

@Deprecated
protected void setValue(short f)

Deprecated.

Use setShort(short) instead.

getShort

public short getShort()

Returns the primitive short value that is used to store this type.

Returns:

primitive short value

setShort

public void setShort(short f)

Sets the primitive short value that is used to store this type.

mul

public void mul(float c)

Specified by:

mul in interface MulFloatingPoint

Overrides:

mul in class AbstractRealType<T extends GenericShortType<T>>

mul

public void mul(double c)

Specified by:

mul in interface MulFloatingPoint

Overrides:

mul in class AbstractRealType<T extends GenericShortType<T>>

add

public void add(T c)

Specified by:

add in interface Add<T extends GenericShortType<T>>

Overrides:

add in class AbstractRealType<T extends GenericShortType<T>>

div

public void div(T c)

Specified by:

div in interface Div<T extends GenericShortType<T>>

Overrides:

div in class AbstractRealType<T extends GenericShortType<T>>

mul

public void mul(T c)

Specified by:

mul in interface Mul<T extends GenericShortType<T>>

Overrides:

mul in class AbstractRealType<T extends GenericShortType<T>>

sub

public void sub(T c)

Specified by:

sub in interface Sub<T extends GenericShortType<T>>

Overrides:

sub in class AbstractRealType<T extends GenericShortType<T>>

set

public void set(T c)

Description copied from interface: Type

Sets the value of another Type.

Specified by:

set in interface Type<T extends GenericShortType<T>>

Overrides:

set in class AbstractRealType<T extends GenericShortType<T>>

Parameters:

c - the new value

setOne

public void setOne()

Specified by:

setOne in interface SetOne

Overrides:

setOne in class AbstractIntegerType<T extends GenericShortType<T>>

setZero

public void setZero()

Specified by:

setZero in interface SetZero

Overrides:

setZero in class AbstractIntegerType<T extends GenericShortType<T>>

inc

public void inc()

Specified by:

inc in interface RealType<T extends GenericShortType<T>>

Overrides:

inc in class AbstractIntegerType<T extends GenericShortType<T>>

dec

public void dec()

Specified by:

dec in interface RealType<T extends GenericShortType<T>>

Overrides:

dec in class AbstractIntegerType<T extends GenericShortType<T>>

toString

public java.lang.String toString()

Overrides:

toString in class AbstractIntegerType<T extends GenericShortType<T>>

getBitsPerPixel

public int getBitsPerPixel()

Specified by:

getBitsPerPixel in interface RealType<T extends GenericShortType<T>>

compareTo

public int compareTo(T other)

Specified by:

compareTo in interface java.lang.Comparable<T extends GenericShortType<T>>

Overrides:

compareTo in class AbstractIntegerType<T extends GenericShortType<T>>

valueEquals

public boolean valueEquals(T t)

Specified by:

valueEquals in interface ValueEquals<T extends GenericShortType<T>>

Overrides:

valueEquals in class AbstractIntegerType<T extends GenericShortType<T>>

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class AbstractIntegerType<T extends GenericShortType<T>>

hashCode

public int hashCode()

Overrides:

hashCode in class AbstractIntegerType<T extends GenericShortType<T>>