Package net.imglib2.img.cell

Class CellImgFactory<T extends NativeType<T>>

java.lang.Object

net.imglib2.img.ImgFactory<T>

net.imglib2.img.NativeImgFactory<T>

net.imglib2.img.cell.CellImgFactory<T>

public class CellImgFactory<T extends NativeType<T>>
extends NativeImgFactory<T>

Factory for creating CellImgs. The cell dimensions for a standard cell can be supplied in the constructor of the factory. If no cell dimensions are given, the factory creates cells of size 10 x 10 x ... x 10.

Field Summary

Fields

Modifier and Type	Field	Description
private int[]	defaultCellDimensions

Constructor Summary

Constructors

Constructor	Description
CellImgFactory()	Deprecated.
CellImgFactory(int... cellDimensions)	Deprecated.
CellImgFactory(T type)
CellImgFactory(T type, int... cellDimensions)

Method Summary

Modifier and Type	Method	Description
CellImg<T,?>	create(int[] dimensions)	Create an Img<T> with the specified dimensions.
CellImg<T,?>	create(long... dimensions)	Create a NativeImg with the specified dimensions.
CellImg<T,?>	create(long[] dimensions, T type)	Deprecated.
private <A extends ArrayDataAccess<A>> CellImg<T,A>	create(long[] dimensions, T type, NativeTypeFactory<T,A> typeFactory)
CellImg<T,?>	create(Dimensions dimensions)	Create an Img<T> with the specified dimensions.
static int[]	getCellDimensions(int[] defaultCellDimensions, int n, Fraction entitiesPerPixel)	Computes cell size array by truncating or expanding defaultCellDimensions to length n.
<S> ImgFactory<S>	imgFactory(S type)	Creates the same ImgFactory for a different generic parameter if possible.
static void	verifyDimensions(int[] dimensions)	Deprecated. This method has been deprecated in favor of Dimensions.verify(int...).
static void	verifyDimensions(long[] dimensions)	Deprecated. This method has been deprecated in favor of Dimensions.verify(long...).

Methods inherited from class net.imglib2.img.ImgFactory

cache, create, create, create, create, create, imgFactory, type

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

defaultCellDimensions

private final int[] defaultCellDimensions

Constructor Detail

CellImgFactory

public CellImgFactory(T type)

CellImgFactory

public CellImgFactory(T type,
                      int... cellDimensions)

CellImgFactory

@Deprecated
public CellImgFactory()

Deprecated.

CellImgFactory

@Deprecated
public CellImgFactory(int... cellDimensions)

Deprecated.

Method Detail

getCellDimensions

public static int[] getCellDimensions(int[] defaultCellDimensions,
                                      int n,
                                      Fraction entitiesPerPixel)
                               throws java.lang.IllegalArgumentException

Computes cell size array by truncating or expanding defaultCellDimensions to length n. Then verifies that a cell does not contain more than Integer.MAX_VALUE entities.

Parameters:

defaultCellDimensions -

n -

entitiesPerPixel -

Returns:

Throws:

java.lang.IllegalArgumentException

create

public CellImg<T,?> create(long... dimensions)

Description copied from class: NativeImgFactory

Create a NativeImg with the specified dimensions.

Specified by:

create in class NativeImgFactory<T extends NativeType<T>>

Parameters:

dimensions - the dimensions of the image.

Returns:

new NativeImg with the specified dimensions.

create

public CellImg<T,?> create(Dimensions dimensions)

Description copied from class: NativeImgFactory

Create an Img<T> with the specified dimensions.

Overrides:

create in class NativeImgFactory<T extends NativeType<T>>

Returns:

new image with the specified dimensions.

create

public CellImg<T,?> create(int[] dimensions)

Description copied from class: NativeImgFactory

Create an Img<T> with the specified dimensions.

Note: This is not a vararg function because the underlying int[] based methods already copies the int[] dimensions into a disposable long[] anyways. This would be an unnecessary copy for int... varargs.

Overrides:

create in class NativeImgFactory<T extends NativeType<T>>

Returns:

new image with the specified dimensions.

create

private <A extends ArrayDataAccess<A>> CellImg<T,A> create(long[] dimensions,
                                                                 T type,
                                                                 NativeTypeFactory<T,A> typeFactory)

imgFactory

public <S> ImgFactory<S> imgFactory(S type)
                             throws IncompatibleTypeException

Description copied from class: ImgFactory

Creates the same ImgFactory for a different generic parameter if possible. If the type "S" does not suit the needs of the ImgFactory (for example implement NativeType in all NativeImgFactory, this method will throw an IncompatibleTypeException.

Specified by:

imgFactory in class ImgFactory<T extends NativeType<T>>

Type Parameters:

S - the new type

Parameters:

type - an instance of S

Returns:

ImgFactory of type S

Throws:

IncompatibleTypeException - if type S is not compatible

create

@Deprecated
public CellImg<T,?> create(long[] dimensions,
                                 T type)

Deprecated.

Specified by:

create in class NativeImgFactory<T extends NativeType<T>>

verifyDimensions

@Deprecated
public static void verifyDimensions(int[] dimensions)
                             throws java.lang.IllegalArgumentException

Deprecated.

This method has been deprecated in favor of Dimensions.verify(int...).

Throws:

java.lang.IllegalArgumentException

verifyDimensions

@Deprecated
public static void verifyDimensions(long[] dimensions)
                             throws java.lang.IllegalArgumentException

Deprecated.

This method has been deprecated in favor of Dimensions.verify(long...).

Throws:

java.lang.IllegalArgumentException