PLMD::ves::BF_CubicBsplines Member List

This is the complete list of members for PLMD::ves::BF_CubicBsplines, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
activate()PLMD::Actionvirtual
addDependency(Action *)PLMD::Action
addKeywordToList(const std::string &, const T)PLMD::ves::BasisFunctionsprotected
addKeywordToList(const std::string &, const std::vector< T > &)PLMD::ves::BasisFunctionsprotected
addKeywordToList(const std::string &, const bool)PLMD::ves::BasisFunctionsinlineprotected
apply() overridePLMD::ves::BasisFunctionsinlinevirtual
arePeriodic() constPLMD::ves::BasisFunctionsinline
BasisFunctions(const ActionOptions &ao)PLMD::ves::BasisFunctionsexplicit
beforeUpdate()PLMD::Actioninlinevirtual
BF_CubicBsplines(const ActionOptions &)PLMD::ves::BF_CubicBsplinesexplicit
calculate() overridePLMD::ves::BasisFunctionsinlinevirtual
calculateFromPDB(const PDB &)PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
checkIfArgumentInsideInterval(const double, bool &) constPLMD::ves::BasisFunctionsinline
checkNeedsGradients() constPLMD::Actioninlinevirtual
checkNumericalDerivatives() constPLMD::Actioninlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearOptions()PLMD::Actionvirtual
commPLMD::Action
deactivate()PLMD::Actioninlinevirtual
Dependencies typedefPLMD::Action
error(const std::string &msg) constPLMD::Action
exit(int c=0)PLMD::Action
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
fopen(const char *path, const char *mode)PLMD::Action
getAllValues(const double, double &, bool &, std::vector< double > &, std::vector< double > &) constPLMD::ves::BF_CubicBsplinesvirtual
getBasisFunctionLabel(const unsigned int index) constPLMD::ves::BasisFunctionsinline
getBasisFunctionLabels() constPLMD::ves::BasisFunctionsinline
getCPT() constPLMD::Action
getDependencies() constPLMD::Actioninline
getDescription() constPLMD::ves::BasisFunctionsinline
getDocumentation() constPLMD::Actionvirtual
getExchangeStep() constPLMD::Action
getKeyword(const std::string &key)PLMD::Action
getKeywordList() constPLMD::ves::BasisFunctionsinline
getKeywordString() constPLMD::ves::BasisFunctions
getLabel() constPLMD::Actioninline
getMultipleValue(const std::vector< double > &, std::vector< double > &, std::vector< std::vector< double > > &, std::vector< std::vector< double > > &, const bool numerical_deriv=false) constPLMD::ves::BasisFunctions
getName() constPLMD::Actioninline
getNumberOfBasisFunctions() constPLMD::ves::BasisFunctionsinline
getOrder() constPLMD::ves::BasisFunctionsinline
getPntrToAction() constPLMD::ves::BasisFunctionsinline
getPntrToVesBias() constPLMD::ves::BasisFunctionsinline
getRestart() constPLMD::Actioninline
getSize() constPLMD::ves::BasisFunctionsinline
getStep() constPLMD::Action
getTargetDistributionIntegrals(const TargetDistribution *) constPLMD::ves::BasisFunctions
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
getType() constPLMD::ves::BasisFunctionsinline
getUniformIntegrals() constPLMD::ves::BasisFunctionsinline
getValue(const double, const unsigned int, double &, bool &) constPLMD::ves::BasisFunctions
hasBeenSet() constPLMD::ves::BasisFunctionsinline
intervalBounded() constPLMD::ves::BasisFunctionsinline
intervalDerivf() constPLMD::ves::BasisFunctionsinline
intervalMax() constPLMD::ves::BasisFunctionsinline
intervalMaxStr() constPLMD::ves::BasisFunctionsinline
intervalMean() constPLMD::ves::BasisFunctionsinline
intervalMin() constPLMD::ves::BasisFunctionsinline
intervalMinStr() constPLMD::ves::BasisFunctionsinline
intervalRange() constPLMD::ves::BasisFunctionsinline
intrinsicIntervalMax() constPLMD::ves::BasisFunctionsinlineprotected
intrinsicIntervalMaxStr() constPLMD::ves::BasisFunctionsinlineprotected
intrinsicIntervalMin() constPLMD::ves::BasisFunctionsinlineprotected
intrinsicIntervalMinStr() constPLMD::ves::BasisFunctionsinlineprotected
inv_normfactor_PLMD::ves::BF_CubicBsplinesprivate
inv_spacing_PLMD::ves::BF_CubicBsplinesprivate
isActive() constPLMD::Actioninline
isOptionOn(const std::string &s) constPLMD::Actioninline
keywordsPLMD::Action
linkAction(Action *)PLMD::ves::BasisFunctions
linkVesBias(VesBias *)PLMD::ves::BasisFunctions
lockRequests()PLMD::Actioninlinevirtual
logPLMD::Action
multi_sim_commPLMD::Action
numberOfBasisFunctions() constPLMD::ves::BasisFunctionsinline
numericalTargetDistributionIntegralsFromGrid(const Grid *) constPLMD::ves::BasisFunctionsprotected
numericalUniformIntegrals()PLMD::ves::BasisFunctionsprotected
parse(const std::string &key, T &t)PLMD::Action
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
plumedPLMD::Action
prepare()PLMD::Actionvirtual
printInfo() constPLMD::ves::BasisFunctions
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
registerKeywords(Keywords &)PLMD::ves::BF_CubicBsplinesstatic
runFinalJobs()PLMD::Actioninlinevirtual
setAllUniformIntegralsToZero()PLMD::ves::BasisFunctionsinlineprotected
setDescription(const std::string &description_in)PLMD::ves::BasisFunctionsinlineprotected
setInterval(const double, const double)PLMD::ves::BasisFunctionsprotected
setInterval(const std::string &, const std::string &)PLMD::ves::BasisFunctionsprotected
setIntervalBounded()PLMD::ves::BasisFunctionsinlineprotected
setIntervalNonBounded()PLMD::ves::BasisFunctionsinlineprotected
setIntrinsicInterval(const double, const double)PLMD::ves::BasisFunctionsprotected
setIntrinsicInterval(const std::string &, const std::string &)PLMD::ves::BasisFunctionsprotected
setLabel(const unsigned int, const std::string &)PLMD::ves::BasisFunctionsinlineprotected
setLabelPrefix(const std::string &)PLMD::ves::BasisFunctionsinlineprotected
setLabels(const std::vector< std::string > &)PLMD::ves::BasisFunctionsinlineprotected
setNonPeriodic()PLMD::ves::BasisFunctionsinlineprotected
setNumberOfBasisFunctions(const unsigned int)PLMD::ves::BasisFunctionsinlineprotected
setNumericalIntegrationBins(const unsigned int nbins)PLMD::ves::BasisFunctionsinlineprotected
setOption(const std::string &s)PLMD::Actionvirtual
setOrder(const unsigned int norder_in)PLMD::ves::BasisFunctionsinlineprotected
setPeriodic()PLMD::ves::BasisFunctionsinlineprotected
setType(const std::string &type_in)PLMD::ves::BasisFunctionsinlineprotected
setUniformIntegral(const unsigned int, const double)PLMD::ves::BasisFunctionsinlineprotected
setUniformIntegrals(const std::vector< double > &)PLMD::ves::BasisFunctionsinlineprotected
setupBF()PLMD::ves::BasisFunctionsprotected
setupInterval()PLMD::ves::BasisFunctionsprotected
setupLabels()PLMD::ves::BasisFunctionsprotectedvirtual
setupUniformIntegrals()PLMD::ves::BasisFunctionsprotectedvirtual
spacing_PLMD::ves::BF_CubicBsplinesprivate
spline(const double, double &) constPLMD::ves::BF_CubicBsplinesprivate
translateArgument(const double, bool &) constPLMD::ves::BasisFunctionsinline
unlockRequests()PLMD::Actioninlinevirtual
update()PLMD::Actioninlinevirtual
warning(const std::string &msg)PLMD::Action
writeBasisFunctionsToFile(OFile &, OFile &, const std::string &min_in, const std::string &max_in, unsigned int nbins=1000, const bool ignore_periodicity=false, const std::string &output_fmt_values="%15.8f", const std::string &output_fmt_derivs="%15.8f", const bool numerical_deriv=false) constPLMD::ves::BasisFunctions
~Action()PLMD::Actionvirtual
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