Source: pourrna
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Uploaders: Gregor Entzian <entzian@tbi.univie.ac.at>
Section: science
Priority: optional
Standards-Version: 3.9.8
Build-Depends: debhelper (>= 9.0), autotools-dev, gengetopt, viennarna-dev (>=2.4.11)

Package: pourrna
Provides: pourrna
Conflicts: pourrna
Section: science
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, viennarna-dev (>=2.4.11)
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology 
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to 
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions 
 directly after flooding a gradient basin. As a result, the transition rates 
 for the filtered landscape topology can be calculated faster than with global 
 approaches. The advantage increases with increasing size of the energy 
 landscape.
