# Smoldyn configuration file to test wildcards in reactions

# Graphical output
graphics opengl_good

# System space and time definitions
dim 2
boundaries x 0 100 p
boundaries y 0 100 p
time_start 0
time_stop 1000
time_step 0.01

# Molecular species and their properties
species A
difc A 1
color A red
display_size A 1

# Surfaces

start_surface walls
action all both reflect
color both black
panel rect +x 0 0 100
panel rect -x 100 0 100
panel rect +y 0 0 100
panel rect -y 0 100 100
end_surface

start_surface circle
action all both reflect
color both black
panel sphere 50 50 15 30
end_surface

# BioNetGen parameters
start_bng polymer_end
expand_rules polymer_end.bngl
read_file polymer_end.net
end_bng


# initial molecules
mol 1000 A u u

text_display time A

cmd B killmolinsphere all circle
cmd N 5000 molcountheader stdout
cmd N 5000 molcount stdout

end_file

