Simulating the Molecular Evolutionary Process of Retrotransposon
Recombination
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Documentation for package ‘retrocombinator’ version 1.0.0
Help Pages
| retrocombinator-package | retrocombinator: Simulating The Evolution of Retrotransposons Over Time |
| ActivityParams | Create ActivityParams object |
| BurstParams | Create BurstParams object |
| FamilyParams | Create FamilyParams object |
| is.ActivityParams | Is x an ActivityParams object? |
| is.BurstParams | Is x a BurstParams object? |
| is.FamilyParams | Is x a FamilyParams object? |
| is.MutationParams | Is x a MutationParams object? |
| is.OutputParams | Is x a OutputParams object? |
| is.RecombParams | Is x a RecombParams object? |
| is.SeedParams | Is x a SeedParams object? |
| is.SelectionParams | Is x a SelectionParams object? |
| is.SequenceParams | Is x a SequenceParams object? |
| is.SimulationParams | Is x a SimulationParams object? |
| MutationParams | Create MutationParams object |
| OutputParams | Create OutputParams object |
| parseSimulationOutput | Input data from CPP output into a list of data frames |
| plotEvolution | Plotting function wrapper |
| RecombParams | Create RecombParams object |
| retrocombinator | retrocombinator: Simulating The Evolution of Retrotransposons Over Time |
| SeedParams | Create SeedParams object |
| SelectionParams | Create SelectionParams object |
| SequenceParams | Create SequenceParams object |
| simulateEvolution | Run an entire simulation with flags |
| SimulationParams | Create SimulationParams object |