ActivityParams          Create ActivityParams object
BurstParams             Create BurstParams object
FamilyParams            Create FamilyParams object
MutationParams          Create MutationParams object
OutputParams            Create OutputParams object
RecombParams            Create RecombParams object
SeedParams              Create SeedParams object
SelectionParams         Create SelectionParams object
SequenceParams          Create SequenceParams object
SimulationParams        Create SimulationParams object
is.ActivityParams       Is x an ActivityParams object?
is.BurstParams          Is x a BurstParams object?
is.FamilyParams         Is x a FamilyParams object?
is.MutationParams       Is x a MutationParams object?
is.OutputParams         Is x a OutputParams object?
is.RecombParams         Is x a RecombParams object?
is.SeedParams           Is x a SeedParams object?
is.SelectionParams      Is x a SelectionParams object?
is.SequenceParams       Is x a SequenceParams object?
is.SimulationParams     Is x a SimulationParams object?
parseSimulationOutput   Input data from CPP output into a list of data
                        frames
plotEvolution           Plotting function wrapper
retrocombinator-package
                        retrocombinator: Simulating The Evolution of
                        Retrotransposons Over Time
simulateEvolution       Run an entire simulation with flags
