all.present	all.present
all.present.in.group	all.present.in.group
alpha	alpha
avbg	QCStats-accessor
avbg,QCStats-method	QCStats-class
avbg-methods	QCStats-class
bg.correct.sa	bg.correct.sa
calculated.from	PairComp-class
calculated.from,PairComp-method	PairComp-class
call.exprs	call.exprs
calls	PairComp-class
calls,PairComp-method	PairComp-class
detection.p.val	detection.p.val
fc	PairComp-class
fc,PairComp-method	PairComp-class
get.annotation	get.annotation
get.array.subset	get.array.subset
get.array.subset,AffyBatch-method	get.array.subset
get.array.subset,exprSet-method	get.array.subset
get.array.subset.affybatch	get.array.subset.affy
get.array.subset.exprset	get.array.subset.affy
get.fold.change.and.t.test	get.fold.change.and.t.test
getActin3	getActin3
getActin5	getActin5
getActinM	getActinM
getAllQCProbes	getAllQCProbes
getAllSpikeProbes	getAllSpikeProbes
getAlpha1	getAlpha1
getAlpha2	getTao
getBioB	getBioB
getBioC	getBioC
getBioD	getBioD
getCreX	getCreX
getGapdh3	getGapdh3
getGapdh5	getGapdh5
getGapdhM	getGapdhM
getQCParams	getQCParams-methods
getQCParams,AffyBatch-method	getQCParams-methods
getQCParams-methods	getQCParams-methods
getTao	getAlpha2
group	PairComp-class
group,PairComp-method	PairComp-class
haveQCParams	haveQCParams
journalpng	journalpng
justMAS	justMAS
maxbg	QCStats-accessor
maxbg,QCStats-method	QCStats-class
maxbg-methods	QCStats-class
means	PairComp-class
means,PairComp-method	PairComp-class
members	PairComp-class
members,PairComp-method	PairComp-class
minbg	QCStats-accessor
minbg,QCStats-method	QCStats-class
minbg-methods	QCStats-class
PairComp-class	PairComp-class
pairwise.comparison	pairwise.comparison
pairwise.filter	pairwise.filter
pairwise.filter,PairComp-method	PairComp-class
pData	PairComp-class
pData,PairComp-method	PairComp-class
percent.present	QCStats-accessor
percent.present,QCStats-method	QCStats-class
percent.present-methods	QCStats-class
plot,PairComp	plot.pairwise.comparison
plot,PairComp-method	plot.pairwise.comparison
plot,QCStats	plot.qc.stats
plot,QCStats-method	plot.qc.stats
plot.pairwise.comparison	plot.pairwise.comparison
plot.qc.stats	plot.qc.stats
plot.qc.stats2	plot.qc.stats
qc	qc
qc,AffyBatch-method	qc
qc.affy	qc.affy
qc.probes	qc.probes
qcProbes	QCStats-accessor
qcProbes,QCStats-method	QCStats-class
qcProbes-methods	QCStats-class
QCStats-class	QCStats-class
ratios	QCStats-accessor
ratios,QCStats-method	QCStats-class
ratios-methods	QCStats-class
read.affy	read.affy
read.affy.mixed	read.affy.mixed
results.summary	get.annotation
screenpng	journalpng
sfs	QCStats-accessor
sfs,QCStats-method	QCStats-class
sfs-methods	QCStats-class
spikeInProbes	QCStats-accessor
spikeInProbes,QCStats-method	QCStats-class
spikeInProbes-methods	QCStats-class
spikes	spikes
target	QCStats-accessor
target,QCStats-method	QCStats-class
target-methods	QCStats-class
trad.scatter.plot	trad.scatter.plot
tt	PairComp-class
tt,PairComp-method	PairComp-class
write.annotation	get.annotation
[,PairComp-method	PairComp-class
[<-,PairComp-method	PairComp-class
