analysePlate            Apply a statistic to the data from each well
                        in a plate
as.all                  Coercion without introduction of NAs
barploterrbar           Barplot with error bars.
combineFrames           Combine the cytoFrames within a cytoSet
                        according to some grouping factor
csApply                 Apply a function over the intensities in a
                        cytoSet
cytoFrame-class         'cytoFrame': a class for storing observed
                        quantitative properties from a population of
                        cells, for example from a FACS run or from
                        automated microscopy
cytoSet-class           'cytoSet': a class for storing raw data from a
                        quantitative cell-based assay
ddCt                    Apply the ddCt method for a given data set
                        (with or without efficiencies
eListWrite              Write the eList
estimateCrosstalkWell   Estimate crosstalk between two color channels.
fitNorm2                Fit bivariate normal distribution.
getDye                  Extract the Dye name (CFP or YFP) from the
                        clone ID by pattern matching
getElement              Functions to extract atomic data types
                        (numeric, character) and vectors from an XML
                        tree
getPradaPar             Set and query global parameters for functions
                        in the prada package
histStack               Stacked histogram
mapSub2Plate            Map subplate well ID and subplate ID to
                        96-well plate well ID
plotNorm2               Plot fitted bivariate normal distribution.
plotPlate               Plot a well statistic in false color
                        representation.
readCytoSet             Create a cytoSet object from one or more FCS
                        3.0 files
readFCS                 Read an FCS 3.0 file
readFCSdata             Auxiliary functions for readFCS
readSDM                 Read an SDM file
readWellXML             Specialized functions for Dorit Arlt's (DKFZ)
                        proliferation assay project
removeCensored          Remove rows that contain censored data
shorth                  Midpoint of the shorth
smoothScatter           Scatterplots with smoothed densities color
                        representation
statWellLocfit          Calculate a statistic for the data from one
                        well
thresholds              Discretize a two-dimensional data space into
                        quadrants by applying thresholds
