Entry: MmDEGenes
Aliases: MmDEGenes
Keywords: datasets
Description: Known DE genes for Mouse quality hybridizations.
URL: ../../../library/arrayQuality/html/MmDEGenes.html

Entry: PRv9mers
Aliases: PRv9mers
Keywords: hplot
Description: Print Run Quality version 9mers
URL: ../../../library/arrayQuality/html/PRv9mers.html

Entry: PRvQCHyb
Aliases: PRvQCHyb
Keywords: hplot
Description: Print run Quality version Quality Control Hybridization
URL: ../../../library/arrayQuality/html/PRvQCHyb.html

Entry: agQuality
Aliases: agQuality agcontrolCode
Keywords: hplot
Description: Diagnostic plots and comparative boxplots for general hybridization, Agilent format
URL: ../../../library/arrayQuality/html/agQuality.html

Entry: Internal functions
Aliases: arrayScal quality2HTML EMSplit qpS2N qpPTLoess qpImage qpHexbin gpFlagWt qpDotPlots qpMAPlots setCtlCol arrayControls replicatesAvariance arrayReplicates outputNormData
Keywords: methods
Description: Internal arrayQuality functions
URL: ../../../library/arrayQuality/html/arrayQuality-internal.html

Entry: globalQuality
Aliases: globalQuality
Keywords: programming
Description: Quality measures for general hybridization.
URL: ../../../library/arrayQuality/html/globalQuality.html

Entry: gpQuality
Aliases: gpQuality
Keywords: hplot
Description: Diagnostic plots and comparative boxplots for general hybridization
URL: ../../../library/arrayQuality/html/gpQuality.html

Entry: gprDB
Aliases: MmReferenceDB index.html HsReferenceDB
Keywords: datasets
Description: Reference slides for Mouse oligos hybridizations
URL: ../../../library/arrayQuality/html/gprDB.html

Entry: maQualityPlots
Aliases: maQualityPlots
Keywords: hplot
Description: Qualitative diagnostic plot for general hybridization
URL: ../../../library/arrayQuality/html/maQualityPlots.html

Entry: prdata
Aliases: 9Mm137.gpr 12Mm250.gpr
Keywords: datasets
Description: Example GPR files
URL: ../../../library/arrayQuality/html/prdata.html

Entry: qualBoxplot
Aliases: qualBoxplot
Keywords: hplot
Description: Comparative boxplot for general hybridization Quality Control
URL: ../../../library/arrayQuality/html/qualBoxplot.html

Entry: qualityScore
Aliases: qualityScore
Keywords: programming
Description: Quality Control score for general hybridization
URL: ../../../library/arrayQuality/html/qualityScore.html

Entry: readAgilent
Aliases: readAgilent
Keywords: programming
Description: Extraction of measures from Agilent (.txt) files.
URL: ../../../library/arrayQuality/html/readAgilent.html

Entry: readGPR
Aliases: readGPR
Keywords: programming
Description: Reading GenePix gpr file
URL: ../../../library/arrayQuality/html/readGPR.html

Entry: readSpot
Aliases: readSpot
Keywords: programming
Description: Extraction of measures from Spot (.spot) files.
URL: ../../../library/arrayQuality/html/readSpot.html

Entry: readcontrolCode
Aliases: readcontrolCode
Keywords: hplot
Description: Control status information
URL: ../../../library/arrayQuality/html/readcontrolCode.html

Entry: scaleRefTable
Aliases: scaleRefTable
Keywords: programming
Description: General hybridization quality scaling
URL: ../../../library/arrayQuality/html/scaleRefTable.html

Entry: slideQuality
Aliases: slideQuality
Keywords: programming
Description: Quality Control statistics for general hybridization
URL: ../../../library/arrayQuality/html/slideQuality.html

Entry: spotQuality
Aliases: spotQuality
Keywords: hplot
Description: Diagnostic plots and comparative boxplots for general hybridization, Spot format
URL: ../../../library/arrayQuality/html/spotQuality.html
