Entry: Aggregate
Aliases: Aggregate
Keywords: programming
Description: A simple aggregation mechanism.
URL: ../../../library/Biobase/html/Aggregate.html

Entry: aaMap
Aliases: aaMap
Keywords: datasets
Description: names and characteristics of amino acids
URL: ../../../library/Biobase/html/aaMap.html

Entry: addVigs2WinMenu
Aliases: addVigs2WinMenu addVig2Menu addVig4Win addVig4Unix addNonExisting addPDF2Vig
Keywords: interface
Description: Add menu items to an existing/new menu of a window
URL: ../../../library/Biobase/html/addVig2Menu.html

Entry: aggregator-class
Aliases: aggregator-class aggenv aggenv,aggregator-method aggfun,aggregator-method aggfun initfun initfun,aggregator-method
Keywords: methods
Description: Class aggregator, a class of aggregators
URL: ../../../library/Biobase/html/aggregator-class.html

Entry: as.data.frame.exprSet
Aliases: as.data.frame.exprSet
Keywords: manip
Description: converts an exprSet to a dataframe
URL: ../../../library/Biobase/html/as.data.frame.exprSet.html

Entry: characterORMIAME-class
Aliases: characterORMIAME-class characterORMIAME
Keywords: classes
Description: Class characterORMIAME, a class to make older versions compatible
URL: ../../../library/Biobase/html/characterORmiame-class.html

Entry: combine
Aliases: combine combine,phenoData,phenoData-method combine,phenoData,ANY-method
Keywords: manip
Description: Combine Data into a single object.
URL: ../../../library/Biobase/html/combine.html

Entry: container-class
Aliases: container-class [,container-method length,container-method content,container-method content locked locked,container-method [[<-,container-method [[,container-method show,container-method
Keywords: methods
Description: container: a class that specializes the list construct of R to provide content and access control
URL: ../../../library/Biobase/html/container-class.html

Entry: contents
Aliases: contents contents,environment-method
Keywords: manip
Description: Function to retrieve contents of environments
URL: ../../../library/Biobase/html/contents.html

Entry: copyEnv
Aliases: copyEnv l2e listLen
Keywords: utilities
Description: List-Environment interactions
URL: ../../../library/Biobase/html/copyEnv.html

Entry: copySubstitute
Aliases: copySubstitute
Keywords: connection programming
Description: Copy between connections or from an to files with configure-like name-value substitution
URL: ../../../library/Biobase/html/copySubstitute.html

Entry: createPackage
Aliases: createPackage
Keywords: programming
Description: Create a package directory from a template, with symbol-value substitution
URL: ../../../library/Biobase/html/createPackage.html

Entry: dumpPackTxt
Aliases: dumpPackTxt
Keywords: models
Description: dump textual description of a package
URL: ../../../library/Biobase/html/dumpPackTxt.html

Entry: eSet-class
Aliases: eSet-class [,eSet-method $.eSet getExpData combine,eSet,eSet-method combine,eSet,ANY-method eList eList<- eList,eSet-method eList<-,eSet,environment-method eList<-,eSet,list-method exprs,eSet-method getExpData,eSet,character-method pData,eSet-method pData<-,eSet-method phenoData,eSet-method phenoData<-,eSet,phenoData-method show,eSet-method eMetadata exprListNM-class eMetadata<- eMetadata<-,eSet,data.frame-method eMetadata,exprList-method eMetadata,eSet-method show,exprListNM-method show,exprList-method
Keywords: classes
Description: Class "eSet": a new exprSet class
URL: ../../../library/Biobase/html/eSet-class.html

Entry: esApply
Aliases: esApply
Keywords: models
Description: Apply for the expression data in an exprSet
URL: ../../../library/Biobase/html/esApply.html

Entry: eset
Aliases: eset
Keywords: datasets
Description: A dataset of class exprSet
URL: ../../../library/Biobase/html/eset.html

Entry: exprList-class
Aliases: exprList-class eList<-,eSet,exprList-method
Keywords: classes
Description: Class "exprList" a class union of a list and an environment.
URL: ../../../library/Biobase/html/exprList-class.html

Entry: exprMatrix-class
Aliases: exprMatrix-class
Keywords: classes
Description: Class union for objects behaving like a matrix
URL: ../../../library/Biobase/html/exprMatrix-class.html

Entry: exprSet-class
Aliases: annotation annotation<- description description<- exprs exprs2excel exprs<- geneNames geneNames<- notes notes<- pData pData<- phenoData<- sampleNames sampleNames<- se.exprs update2MIAME varLabels update2MIAME,exprSet-method write.exprs exprSet-class exprSet $.exprSet description,exprSet-method description<-,exprSet-method exprs,exprSet-method exprs<-,exprSet-method se.exprs,exprSet-method [,exprSet-method [[<-,exprSet-method [[,exprSet-method se.exprs<- se.exprs<-,exprSet-method notes,exprSet-method notes<-,exprSet-method geneNames,exprSet-method geneNames<-,exprSet-method pData,exprSet-method pData<-,exprSet-method varLabels,exprSet-method sampleNames,exprSet-method sampleNames<-,exprSet-method phenoData,exprSet-method phenoData<-,exprSet,phenoData-method annotation,exprSet-method annotation<-,exprSet-method show,exprSet-method split,exprSet,vector-method split,exprSet,factor-method write.exprs,exprSet-method exprs2excel,exprSet-method
Keywords: methods
Description: Class exprSet, a class for microarray data, and methods for processing them
URL: ../../../library/Biobase/html/exprSet-class.html

Entry: geneData
Aliases: geneData geneCov
Keywords: datasets
Description: A subset of some expression data.
URL: ../../../library/Biobase/html/geneData.html

Entry: getPkgVigs
Aliases: getPkgVigs
Keywords: utilities
Description: A function to list PDF files for a package
URL: ../../../library/Biobase/html/getPkgVigs.html

Entry: iter-methods
Aliases: iter-methods iter iter,exprSet,missing,function-method iter,exprSet,missing,list-method iter,exprSet,character,function-method
Keywords: methods
Description: Methods for the generic iter.
URL: ../../../library/Biobase/html/iter-methods.html

Entry: MIAME-class
Aliases: MIAME-class MIAME abstract abstract,MIAME-method abstract,exprSet-method expinfo expinfo,MIAME-method hybridizations hybridizations,MIAME-method normControls normControls,MIAME-method preproc preproc,MIAME-method samples samples,MIAME-method otherInfo otherInfo,MIAME-method show,MIAME-method
Keywords: classes
Description: Class MIAME, a class for storing microarray experiment information
URL: ../../../library/Biobase/html/miame-class.html

Entry: multiassign
Aliases: multiassign
Keywords: data
Description: Assign Values to a Names
URL: ../../../library/Biobase/html/multiassign.html

Entry: openPDF
Aliases: openPDF
Keywords: utilities
Description: A function to view PDF files
URL: ../../../library/Biobase/html/openPDF.html

Entry: openVignette
Aliases: openVignette
Keywords: utilities
Description: Open a selected Vignette
URL: ../../../library/Biobase/html/openVignette.html

Entry: package.version
Aliases: package.version
Keywords: utilities
Description: A function to report package versions
URL: ../../../library/Biobase/html/package.version.html

Entry: phenoData-class
Aliases: phenoData-class phenoData $.phenoData phenoData<-,pheno [,phenoData-method pData,phenoData-method pData<-,phenoData-method show,phenoData-method split,phenoData,vector-method varLabels,phenoData-method [[,phenoData-method [[<-,phenoData-method convertVarLabels,phenoData-method getUnits,phenoData,character-method getVarMetadata,phenoData,character,character-method addVarMetadataEntry,phenoData,character,character-method getVarMetadata,phenoData,character,missing-method varMetadata,phenoData-method addVarMetadataEntry convertVarLabels getUnits getVarMetadata varMetadata
Keywords: methods
Description: Class phenoData, a class for patient or experiment level data.
URL: ../../../library/Biobase/html/phenoData-class.html

Entry: read.MIAME
Aliases: read.MIAME
Keywords: file
Description: Read MIAME information
URL: ../../../library/Biobase/html/read.MIAME.html

Entry: read.exprSet
Aliases: read.exprSet
Keywords: manip
Description: A function to read experimental data and create an exprSet object using the data read in as a text file
URL: ../../../library/Biobase/html/read.exprSet.html

Entry: read.phenoData
Aliases: read.phenoData
Keywords: file
Description: Read phenoData
URL: ../../../library/Biobase/html/read.phenoData.html

Entry: strbreak
Aliases: strbreak
Keywords: character
Description: Break Character Strings to Fit Width
URL: ../../../library/Biobase/html/strbreak.html

Entry: testBioCConnection
Aliases: testBioCConnection
Keywords: utilities
Description: A function to check internet connectivity to Bioconductor
URL: ../../../library/Biobase/html/testBioCConnection.html
