Entry: analysePlate
Aliases: analysePlate
Keywords: manip
Description: Apply a statistic to the data from each well in a plate
URL: ../../../library/prada/html/analysePlate.html

Entry: as.all
Aliases: as.all
Keywords: manip
Description: Coercion without introduction of NAs
URL: ../../../library/prada/html/as.all.html

Entry: barploterrbar
Aliases: barploterrbar
Keywords: hplot
Description: Barplot with error bars.
URL: ../../../library/prada/html/barploterrbar.html

Entry: combineFrames
Aliases: combineFrames
Keywords: 
Description: Combine the cytoFrames within a cytoSet according to some grouping factor
URL: ../../../library/prada/html/combineFrames.html

Entry: csApply
Aliases: csApply
Keywords: manip
Description: Apply a function over the intensities in a cytoSet
URL: ../../../library/prada/html/csApply.html

Entry: cytoFrame-class
Aliases: cytoFrame-class [,cytoFrame-method description,cytoFrame-method description<-,cytoFrame,character-method exprs,cytoFrame-method exprs<-,cytoFrame,matrix-method colnames,cytoFrame-method colnames<-,cytoFrame-method show,cytoFrame-method $.cytoFrame
Keywords: classes
Description: 'cytoFrame': a class for storing observed quantitative properties from a population of cells, for example from a FACS run or from automated microscopy
URL: ../../../library/prada/html/cytoFrame-class.html

Entry: cytoSet-class
Aliases: cytoSet-class [,cytoSet-method [[,cytoSet-method [[<-,cytoSet-method show,cytoSet-method length,cytoSet-method pData,cytoSet-method colnames,cytoSet-method colnames<-,cytoSet-method phenoData,cytoSet-method phenoData<-,cytoSet,phenoData-method
Keywords: classes
Description: 'cytoSet': a class for storing raw data from a quantitative cell-based assay
URL: ../../../library/prada/html/cytoSet-class.html

Entry: ddCt
Aliases: ddCt
Keywords: 
Description: Apply the ddCt method for a given data set
URL: ../../../library/prada/html/ddCt.html

Entry: eListWrite
Aliases: eListWrite
Keywords: 
Description: Write the eList
URL: ../../../library/prada/html/eListWrite.html

Entry: fitNorm2
Aliases: fitNorm2
Keywords: 
Description: Fit bivariate normal distribution.
URL: ../../../library/prada/html/fitNorm2.html

Entry: getPradaPar
Aliases: setPradaPars getPradaPar
Keywords: manip
Description: Set and query global parameters for functions in the prada package
URL: ../../../library/prada/html/getPradaPar.html

Entry: histStack
Aliases: histStack
Keywords: hplot
Description: Stacked histogram
URL: ../../../library/prada/html/histStack.html

Entry: plotNorm2
Aliases: plotNorm2
Keywords: 
Description: Plot fitted bivariate normal distribution.
URL: ../../../library/prada/html/plotNorm2.html

Entry: plotPlate
Aliases: plotPlate
Keywords: hplot
Description: Plot a well statistic in false color representation.
URL: ../../../library/prada/html/plotPlate.html

Entry: readCytoSet
Aliases: readCytoSet
Keywords: IO
Description: Create a cytoSet object from one or more FCS 3.0 files
URL: ../../../library/prada/html/readCytoSet.html

Entry: readFCS
Aliases: readFCS
Keywords: IO
Description: Read an FCS 3.0 file
URL: ../../../library/prada/html/readFCS.html

Entry: readFCSaux
Aliases: readFCSdata readFCStext readFCSheader readFCSgetPar
Keywords: IO
Description: Auxiliary functions for readFCS
URL: ../../../library/prada/html/readFCSaux.html

Entry: readSDM
Aliases: readSDM
Keywords: 
Description: Read an SDM file
URL: ../../../library/prada/html/readSDM.html

Entry: removeCensored
Aliases: removeCensored removeCensored,matrix-method removeCensored,data.frame-method removeCensored,cytoFrame-method
Keywords: 
Description: Remove rows that contain censored data
URL: ../../../library/prada/html/removeCensored.html

Entry: thresholds
Aliases: thresholds
Keywords: 
Description: Discretize a two-dimensional data space into quadrants by applying thresholds
URL: ../../../library/prada/html/thresholds.html
