allSameLetter	allSameLetter
allSameLetter,BioString,BioString-method	BioString-class
allSameLetter,BioString,character-method	BioString-class
allSameLetter,character,ANY-method	allSameLetter
alphabetFrequency	alphabetFrequency
AminoAcidAlphabet-class	AminoAcidAlphabet-class
anySameLetter	anySameLetter
anySameLetter,BioString,BioString-method	BioString-class
anySameLetter,BioString,character-method	BioString-class
anySameLetter,character,ANY-method	anySameLetter
as.character,BioString-method	BioString-class
as.matrix,BioString-method	BioString-class
BioAlphabet-class	BioAlphabet-class
BioPatternAlphabet-class	BioPatternAlphabet-class
BioString-class	BioString-class
BioStringNewValues	BioStringNewValues
BioStringNewValues,AminoAcidAlphabet,numeric-method	AminoAcidAlphabet-class
BioStringNewValues,BioPatternAlphabet,numeric-method	BioPatternAlphabet-class
BioStringNewValues,NucleotideAlphabet,numeric-method	NucleotideAlphabet-class
DNAAlphabet	DNAAlphabet
DNAPatternAlphabet	DNAPatternAlphabet
DNAString	NucleotideString
DNASuffixArray	DNASuffixArray
gapletter<-	gapletterReplace
gapletter<-,BioAlphabet,character-method	BioAlphabet-class
gapletter<-,BioPatternAlphabet,character-method	BioPatternAlphabet-class
initialize,BioAlphabet-method	BioAlphabet-class
initialize,BioPatternAlphabet-method	BioPatternAlphabet-class
initialize,BioString-method	BioString-class
initialize,NucleotideAlphabet-method	NucleotideAlphabet-class
length,BioString-method	BioString-class
LongestCommonPrefix	LongestCommonPrefix
LongestCommonPrefix-class	LongestCommonPrefix-class
matchDNAPattern	matchDNAPattern
matchDNAPattern,ANY,character-method	matchDNAPattern
matchDNAPattern,BioString,BioString-method	BioString-class
matchDNAPattern,character,ANY-method	matchDNAPattern
nchar,BioString,character-method	BioString-class
nchar,BioString,missing-method	BioString-class
NucleotideAlphabet-class	NucleotideAlphabet-class
NucleotideString	NucleotideString
reverseComplement	reverseComplement
RNAAlphabet	DNAAlphabet
RNAPatternAlphabet	DNAPatternAlphabet
show,BioString-method	BioString-class
sortDNAString	sortDNAString
substr,BioString-method	BioString-class
substring,BioString-method	BioString-class
yeastSEQCHR1	yeastSEQCHR1
[,BioString,ANY,ANY,ANY-method	BioString-class
[,BioString-method	BioString-class
[,LongestCommonPrefix,matrix,missing,missing-method	LongestCommonPrefix-class
[[,BioString-method	BioString-class
