summary.tsp              package:tspair              R Documentation

_S_u_m_m_a_r_y _o_f _a _t_s_p _o_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     This function can be used to summarize a TSP object.

_U_s_a_g_e:

       ## S3 method for class 'tsp':
       summary(object,select=NULL,printall=FALSE,...)

_A_r_g_u_m_e_n_t_s:

  object: A tsp object

  select: A numerical indicator of which TSP to summarize, if NULL, all
          TSPs are summarized one at a time

printall: If printall=TRUE all TSPs are summarized at once

     ...: Summary arguments (ignored)

_D_e_t_a_i_l_s:

     summary() accepts a tsp object calculated on an expression set or
     gene expression matrix. The result is a table of frequencies for
     the TSP indicator versus the group indicator.

_V_a_l_u_e:

     A table.

_A_u_t_h_o_r(_s):

     Jeffrey T. Leek jtleek@jhu.edu

_R_e_f_e_r_e_n_c_e_s:

     D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying
     gene expression profiles from pairwise mRNA comparisons," 
     Statist. Appl. in Genetics and Molecular Biology, 3, 2004.

_S_e_e _A_l_s_o:

     'tspplot', 'ts.pair', 'tspcalc','tspsig', 'predict.tsp'

_E_x_a_m_p_l_e_s:

       ## Not run: 
       ## Load data
       data(tspdata) 

       ## Run tspcalc() on a data matrix and grp vector
       tsp1 <- tspcalc(dat,grp)

       ## Get the summary for the tsp object. 
       summary(tsp1)
       summary.tsp(tsp1)
      ## End(Not run)

