tspplot                package:tspair                R Documentation

_G_r_a_p_h_i_c_a_l _d_i_s_p_l_a_y _o_f _t_s_p _o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Graphical display of tsp objects

_U_s_a_g_e:

       tspplot(tspobj)

_A_r_g_u_m_e_n_t_s:

  tspobj: A tsp object.

_D_e_t_a_i_l_s:

     tspplot() creates a plot of each top scoring pair.The figure plots
      the expression for the first gene in the TSP pair versus the
     expression  for the second gene in the TSP pair across arrays. The
     user defined  groups are plotted in the colors red and blue. The
     score for the pair is shown across the top of each plot. If there
     is more than one TSP,  hitting return will cycle from one TSP to
     the next.

_V_a_l_u_e:

     Nothing of interest.

_A_u_t_h_o_r(_s):

     Jeffrey T. Leek jtleek@jhu.edu

_R_e_f_e_r_e_n_c_e_s:

     D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying
     gene expression profiles from pairwise mRNA comparisons, Statist.
     Appl. in Genetics and Molecular Biology, 3, 2004.

_S_e_e _A_l_s_o:

     'tspcalc', 'ts.pair', 'tspsig','predict.tsp', 'summary.tsp'

_E_x_a_m_p_l_e_s:

       ## Not run: 
       ## Load data
       data(tspdata) 
       tsp1 <- tspcalc(dat,grp)
       tspplot(tsp1)
      
     ## End(Not run)

