Reaction-class {rsbml} | R Documentation

## SBML type "Reaction"

### Description

Any transformation, transportation or binding process that changes the quantity of one or more `Species`.

### Instantiation

Objects can be created by calls of the form `new("Reaction", ...)`.

### Slots

`id`:
  Object of class `"character"` uniquely identifying this component.
`name`:
  Object of class `"character"` naming this component.
`reactants`:
  Object of class `"list"` containing `SpeciesReference`s specifying the `Species` that are reactants for this reaction.
`products`:
  Object of class `"list"` containing `SpeciesReference`s specifying the `Species` that are products for this reaction.
`modifiers`:
  Object of class `"list"` containing `ModifierSpeciesReference`s specifying the `Species` that are modifiers for this reaction.
`kineticLaw`:
  Object of class `"KineticLaw"` that dynamically defines the rate of the reaction.
`reversible`:
  Object of class `"logical"` indicating whether the direction of this reaction is reversible.
`fast`:
  Object of class `"logical"` indicating whether this reaction should be considered instantaneous relative to non-fast reactions.
`metaId`:
  Object of class `"character"` that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the `annotation` element.
`notes`:
  Object of class `"character"` containing user-readable XHTML notes about an element.
`annotation`:
  Object of class `"character"` containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.
`cvTerms`:
  Object of class `"list"` containing instances of `CVTerm` associated with this element.
`sboTerm`:
  Object of class `"integer"` identifying a term in the Systems Biology Ontology (SBO).

### Extends

Class `"SBase"`, directly.

### Methods

id
  `signature(object = "Reaction")`: gets the `id` slot
id<-
  `signature(object = "Reaction")`: sets the `id` slot
name
  `signature(object = "Reaction")`: gets the `name` slot
name<-
  `signature(object = "Reaction")`: sets the `name` slot
fast
  `signature(object = "Reaction")`: gets the `fast` slot
fast<-
  `signature(object = "Reaction")`: sets the `fast` slot
kineticLaw
  `signature(object = "Reaction")`: gets the `kineticLaw` slot
kineticLaw<-
  `signature(object = "Reaction")`: sets the `kineticLaw` slot
modifiers
  `signature(object = "Reaction")`: gets the `modifiers` slot
modifiers<-
  `signature(object = "Reaction")`: sets the `modifiers` slot
products
  `signature(object = "Reaction")`: gets the `products` slot
products<-
  `signature(object = "Reaction")`: sets the `products` slot
reactants
  `signature(object = "Reaction")`: gets the `reactants` slot
reactants<-
  `signature(object = "Reaction")`: sets the `reactants` slot
reversible
  `signature(object = "Reaction")`: gets the `reversible` slot
reversible<-
  `signature(object = "Reaction")`: sets the `reversible` slot

### Author(s)

Michael Lawrence

### References

http://sbml.org/documents/

[Package rsbml version 2.2.1 Index]