SOSResult-class {rsbml} | R Documentation

## SOSResult

### Description

A result from simulating an `SOSExperiment`. Contains the time course for each of the model variables: the `Species` quantities, `Compartment` sizes, `Parameter` values, and `Reaction` rates.

### Slots

`data`:
  A `"data.frame"` containing the time course data. Each row contains the value at a single time point for a single time course. Has the following columns:
  `sample`
    A factor, the run number, only exists if there were multiple runs, see `SOSDesign`.
  `type`
    A factor, the SBML element type for the time course, e.g. `"species"`.
  `id`
    A factor, the `id` of the SBML element for the time course.
  `time`
    The numeric time value for the time point.
  `value`
    The actual numeric value for the time course at that time.
`sens`:
  A `"matrix"` with results from sensitivity analysis, not yet supported.

### Extends

Class `"ExperimentResult"`, directly.

### Methods

as.ts
  `signature(x = "SOSResult")`: converts this object to a time course object of class `ts`. This allows analysis of the results with existing R infrastructure for time course analysis.
compartments
  `signature(object = "SOSResult")`: returns a subset containing only the `Compartment` size courses.
parameters
  `signature(object = "SOSResult")`: returns a subset containing only the global `Parameter` value courses.
reactions
  `signature(object = "SOSResult")`: returns a subset containing only the `Reaction` rate courses.
species
  `signature(object = "SOSResult")`: returns a subset containing only the `Species` quantity courses.

### Author(s)

Michael Lawrence

### References

See http://www.tbi.univie.ac.at/~raim/odeSolver/ for more information on the SBML ODE Solver library.

### See Also

`SOSExperiment` for running a simulation and obtaining an instance of this class.

[Package rsbml version 2.2.1 Index]