"plot-methods" {rflowcyt} | R Documentation

## Graphical representation of an object

### Description

The default action is a graphical plot of the object.

### Methods

x = "ANY", y = "ANY"
  A scatterplot or other graphical representation is produced.
x = "FCS", y = "missing"
  The default action is contour-image pairs plotting for all the column variables.
x = "FCS", y = "missing", image.parallel.plot=FALSE, joint=TRUE, ...

  An optional image parallel coordinates plotting (either marginal or joint) for each row/cell across all column variables can also be displayed.

  The optional signature details are listed below:

image.parallel.plot
  boolean; if true the image parallel coordinates plot will be implemented instead of default pairs plot; default value of FALSE
joint
  boolean; if image.parallel.plot is TRUE, then this boolean establishes if the image parallel coordinates plot is joint or not
...
  optional additional plot variables; See `ImageParCoord` or `pairs.CSP` for additional information on image parallel coordinates plotting and pairs contour-image plotting, respectively.
x="PRIM.step", y="missing"
  Trajectory plot using the 'trajectory.pl' function in the rfcprim pacakge is displayed for the step.

x="PRIM.step.set", y="missing"
  Trajectory plot using the 'trajectory.pl' function in the rfcprim is displayed for the peeling and the expansion steps.
x="PRIM.crossval.step", y="missing"
  Trajectory plot using the 'trajectory.pl' function in the rfcprim is displayed for the peeling and the expansion steps for each testdata set.
x="PRIM.rule", y="missing"
  Trajectory plots for all 3 steps is displayed.

[Package rflowcyt version 1.16.0 Index]