hsTargets              package:microRNA              R Documentation

_H_u_m_a_n _m_i_c_r_o_R_N_A_s _a_n_d _t_h_e_i_r _t_a_r_g_e_t _I_D_s

_D_e_s_c_r_i_p_t_i_o_n:

     A set of human microRNA names and their corresponding known
     targets given as ensembl Trascript IDs.

_U_s_a_g_e:

     data(hsTargets)

_F_o_r_m_a_t:

     A data frame of microRNAs and their target ensembl IDs as
     recovered from miRBase.  Additional columns are also provided to 
     give the Chromosome as well as the start and end position of the
     microRNA binding site, and the strand orientation (plus or minus).

_D_e_t_a_i_l_s:

     Each mapping represents a different human microRNA, paired with
     one viable target.  Other information about where the microRNA
     binds is also included.  Some microRNAs have multiple targets and
     so some microRNAs may be represented more than once.

_S_o_u_r_c_e:

     <URL: http://microrna.sanger.ac.uk/sequences/index.shtml>

_R_e_f_e_r_e_n_c_e_s:

     miRBase: microRNA sequences, targets and gene nomenclature.
     Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright
     AJ. NAR, 2006, 34, Database Issue, D140-D144

     The microRNA Registry. Griffiths-Jones S. NAR, 2004, 32, Database
     Issue, D109-D111

_E_x_a_m_p_l_e_s:

     data(hsTargets)

