autoGate              package:flowStats              R Documentation

_A_u_t_o_m_a_t_e_d _g_a_t_i_n_g _o_f _s_i_n_g_l_e _p_o_p_u_l_a_t_i_o_n_s _i_n _2_D

_D_e_s_c_r_i_p_t_i_o_n:

     This function tries to fit a single norm2Filter based on a rough
     preselection of the data. This function is considered internal.
     Please use the API provided by 'lymphGate'.

_U_s_a_g_e:

     autoGate(x, ..., scale = 2.5)

_A_r_g_u_m_e_n_t_s:

       x: An object of class 'flowSet'

     ...: Named arguments or a list of the ranges used for the initial
          rough preselection. This gets passed on to 'rectangleGate',
          see it's documentation for details. 

   scale: The 'scale' parameter that gets passed on to 'norm2Filter'. 

_D_e_t_a_i_l_s:

     The 'flowSet' is first filtered using a 'rectangleGate' and the
     'norm2Filter' is subsequently fitted to the remaining subset.

_V_a_l_u_e:

     A list with items:

      x : The filtered 'flowSet'. 

 n2gate : The 'norm2Filter' object. 

n2gateResults : The 'filterResult' after applying the 'norm2Filter' on
          the 'flowSet'. 

_A_u_t_h_o_r(_s):

     Florian Hahne

_S_e_e _A_l_s_o:

     'lymphGate', 'norm2Filter'

_E_x_a_m_p_l_e_s:

     data(GvHD)
     flowStats:::autoGate(GvHD[10:15], "FSC-H"=c(100,500), "SSC-H"=c(0, 400))

