qaProcess.KLDistPlot {flowQ} | R Documentation

## Creates a QA process for comparisons of KL Distances across multiple samples

### Description

This function takes a list of `flowSet` as input and creates all necessary outputs for an 'KLDistPlot' type of QA process. Objects created by this function can be laid out as HTML using `writeQAReport`.

### Usage

     qaProcess.KLDistPlot(flowList,dyes=NULL,outdir="QAReport",
                            alpha=0.05,det.dimensions=c(400,400),pdf=FALSE,...)

### Arguments

`flowList` | A list of `flowSet`
`dyes` | Flow parameters to be compared across multiple samples. If set to NULL, all parameters that are duplicated across the list of `flowSet` are identified and compared.
`outdir` | The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time.
`alpha` | Outlier mislabeling rate
`det.dimensions` | the dimensions of each image generated by the QA process.
`pdf` | boolen value determinining if pdf files or jpeg images will be produced by the QA process
`...` | Further arguments.

### Details

QA processes of type 'KLDistPlot' detects differences in the pairwise KL Distances of the flow parameters across multiple samples.

For more details on how to layout `qaProcess` objects to HTML, see `writeQAReport` and `qaReport`.

### Value

An object of class `qaProcess`.

### Author(s)

Nishant Gopalakrishnan

### See Also

`writeQAReport`, `qaReport`, `qaProcess`, `qaProcess.BoundaryPlot`, `qaProcess.DensityPlot`, `qaProcess.2DStatsPlot`

### Examples

    data(qData)
    dest <- tempdir()
    resKLdist <- qaProcess.KLDistPlot(qData,dyes=c("SSC-A","FSC-A"),outdir=dest,alpha=0.05,pdf=TRUE)
    resKLdist

[Package flowQ version 1.4.0 Index]