qaReport {flowQ} | R Documentation

## Create HTML report using one or several QA process function(s)

### Description

This function combines all graphical output of multiple QA process functions for one `flowSet` in a single hyperlinked HTML document.

### Usage

    qaReport(set, qaFunctions, outdir = "./qaReport", argLists, grouping =
    NULL, ...)

### Arguments

`set` | A `flowSet`
`qaFunctions` | A character vector of the names of QA process functions to be used
`outdir` | The directory to which the HTML report is to be saved.
`argLists` | lists of argument lists for each of the QA process functions specified via `qaFunctions`
`grouping` | A character scalar indicating a variable in the `flowSet`'s `phenoData` that is used as a grouping factor in the output.
`...` | Further arguments that are passed on to `writeQAReport`.

### Details

This is a simple convenience function to produce HTML QA reports for a single `flowSet` given a list of QA process functions. For more fine-grained control use function `writeQAReport` directly.

An entry point to the output of this function can be found at `outdir/index.html`.

### Value

The function is called for it's side effects

### Author(s)

Florian Hahne

### See Also

`qaProcess.marginevents`, `writeQAReport`, `qaProcess`, `qaProcess.timeline`

### Examples

    ## Not run:
    data(GvHD)
    GvHD <- transform(GvHD, "FL1-H"=asinh(`FL1-H`), "FL2-H"=asinh(`FL2-H`))
    dest <- tempdir()
    qaReport(GvHD, c("qaProcess.timeline", "qaProcess.marginevents"), dest,
     list(list(channel="FL1-H", cutoff=1), list(channels=c("FL1-H",
      "FL2-H"), cFactor=4)))
    browseURL(file.path(dest, "index.html"))
    ## End(Not run)

[Package flowQ version 1.4.0 Index]