flowJoCompensate-methods     package:flowFlowJo     R Documentation

_C_o_m_p_e_n_s_a_t_e _f_l_o_w _c_y_t_o_m_e_t_r_y _d_a_t_a _t_h_e _s_a_m_e _w_a_y _a_s _F_l_o_w_J_o _d_o_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     FlowJo currently implements its compensation/spillover matrices
     differently than they are implemented in the general flow
     cytometry community. Currently, in order to obtain similar results
     (e.g. MFIs and cell counts) between FlowJo and flowCore, it is
     necessary to apply the compensation matrix to the data in the
     usual way (ie. via {}``compensate''), and then to divide all of
     the observed data by the maximum of the values in the compensation
     matrix. The flowFlowJo package implements a method,
     flowJoCompensate, to automatically take care of this issue.

_M_e_t_h_o_d_s:



     _f_l_o_w_D_a_t_a = "_f_l_o_w_F_r_a_m_e", _c_o_m_p_M_a_t_r_i_x = "_m_a_t_r_i_x" flowJoCompensate can
          take in either a flowFrame or a flowSet as well as a
          numerical matrix of compensation values. 


     _f_l_o_w_D_a_t_a = "_f_l_o_w_S_e_t", _c_o_m_p_M_a_t_r_i_x = "_m_a_t_r_i_x" flowJoCompensate can
          take in either a flowFrame or a flowSet as well as a
          numerical matrix of compensation values. 

