# Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.

## Documentation for package ‘flowFlowJo’ version 1.2.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

flowFlowJo-package | Turn FlowJo workspaces into flowCore compliant objects
collectSummaryFlowInfo | Collect Population Statistics on Flow Files
collectSummaryFlowInfo,flowJoList-method | Collect Population Statistics on Flow Files
createFlowReport | Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
createFlowReport,fcsSummaryList-method | Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
fcsSummary-class | Collect Population Statistics on Flow Files
fcsSummaryList-class | Collect Population Statistics on Flow Files
flowFlowJo | Turn FlowJo workspaces into flowCore compliant objects
flowJoCompensate | Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate,flowFrame,matrix-method | Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate,flowSet,matrix-method | Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate-methods | Compensate flow cytometry data the same way as FlowJo does
flowJoList-class | Parse one or more FlowJo workspaces
flowJoObj-class | Parse one or more FlowJo workspaces
gateNodeToFilterObject | Parse one or more FlowJo workspaces
gateNodeToFilterObject,XMLInternalElementNode-method | Parse one or more FlowJo workspaces
gatherFlowJoGates | Parse one or more FlowJo workspaces
gatherFlowJoGates,XMLInternalDocument-method | Parse one or more FlowJo workspaces
gatherFlowJoTransformations | Parse one or more FlowJo workspaces
gatherFlowJoTransformations,XMLInternalDocument-method | Parse one or more FlowJo workspaces
getFlowJoCompMatrix | Parse one or more FlowJo workspaces
getFlowJoCompMatrix,XMLInternalDocument-method | Parse one or more FlowJo workspaces
getFlowJoGates | getFlowJoGates
getFlowJoGates,flowJoList,character-method | getFlowJoGates
getFlowJoGates,flowJoList-method | getFlowJoGates
getFlowJoGates,flowJoObj,character-method | getFlowJoGates
getFlowJoGates,flowJoObj-method | getFlowJoGates
getFlowJoSummary | Summarize FlowJo Workspaces
getFlowJoVersion | Parse one or more FlowJo workspaces
getFlowJoVersion,XMLInternalDocument-method | Parse one or more FlowJo workspaces
getWellId | Parse one or more FlowJo workspaces
getWellId,flowFrame-method | Parse one or more FlowJo workspaces
readFlowJoFile | Parse one or more FlowJo workspaces
readFlowJoFile,character-method | Parse one or more FlowJo workspaces
readFlowJoList | Parse one or more FlowJo workspaces
simplifyGateNames | Standardize flow cytometry gate names
simplifyGateNames,character-method | Standardize flow cytometry gate names
simplifyGateNames,filter-method | Standardize flow cytometry gate names