Package: SPIA
Version: 1.0.0
Date: 2009-03-09
Title: Signaling Pathway Impact Analysis (SPIA) using combined evidence
        of pathway over-representation and unusual signaling
        perturbations
Author: Adi Laurentiu Tarca <tarca@med.wayne.edu>, Purvesh Kathri
        <purvesh@cs.wayne.edu> and Sorin Draghici <sorin@wayne.edu>
Depends: R (>= 2.8.0), graphics,RCurl
Suggests: graph, Rgraphviz, KEGGgraph
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements the Signaling Pathway Impact
        Analysis (SPIA) which uses the information form a list of
        differentially expressed genes and their log fold changes
        together with signaling pathways topology, in order to identify
        the pathways most relevant to the condition under the study.
License: GPL (>=2)
URL: http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1
biocViews: Microarray, GraphsAndNetworks
Collate: spia.R plotP.R combfunc.R getP2.R
Imports: graphics,RCurl
LazyLoad: yes
Packaged: 2009-04-21 12:41:25 UTC; biocbuild
Built: R 2.9.0; ; 2009-04-21 16:13:25 UTC; windows
