kgmlFileName2PathwayName {KEGGgraph} | R Documentation

## Convert KGML file name to pathway name

### Description

The function uses KEGG package and converts KGML file name into human readable pathway name.

### Usage

    kgmlFileName2PathwayName(filename)

### Arguments

`filename` | A KGML file name

### Details

So far it only supports KGML files organized by species.

NOTE: there is issue of package loading sequence to use this function: the 'KEGG.db' must be loaded before 'KEGGgraph' to use it properly. Otherwise the `mget` returns error of 'KEGGPATHID2NAME' is not a environment. So far I don't where does this bug come from, so I commented out the examples.

### Value

A character string of pathway name

### Author(s)

Jitao David Zhang mailto:j.zhang@dkfz.de

[Package KEGGgraph version 1.1.0 Index]