readPairs-methods {HELP} | R Documentation

## Read Nimblegen .pair files (methods)

### Description

Methods for extracting data from corresponding files in the Nimblegen .pair format.

### Methods

x = "missing", y = "missing", z = "missing"
  Handle empty function call
x = "vector", y = "missing", z = "missing"
  Handle single vector input. If two values specified in vector, reinterpret function call with two character inputs. Otherwise, handle as empty function call.
x = "vector", y = "vector", z = "missing"
  Handle two vector input. If vectors of unit length, reinterpret function call with two character inputs. Otherwise, handle as improper function call.
x = "character", y = "character", z = "ExpressionSet"
  Handle two character vector inputs, each specifiying a filename to use when reading pair information. Pair data will be written to an `ExpressionSet` object.
x = "character", y = "character", z = "character"
  Handle two character vector inputs, each specifiying a filename to use when reading pair information. Pair data will be written to a database.

### Author(s)

Reid F. Thompson (rthompso@aecom.yu.edu)

### See Also

`readPairs`

[Package HELP version 1.2.0 Index]