Package: GeneRegionScan
Version: 1.0.0
Date: 2008-11-07
Title: GeneRegionScan
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasse.folkersen@ki.se>
Depends: methods, Biobase, Biostrings
Imports: Biobase, affxparser, RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi
LazyLoad: yes
Description: A package with focus on analysis of discrete regions of
        the genome. This package is useful for investigation of one or
        a few genes using Affymetrix data, since it will extract probe
        level data using the Affymetrix Power Tools application and
        wrap these data into a ProbeLevelSet. A ProbeLevelSet directly
        extends the expressionSet, but includes additional information
        about the sequence of each probe and the probe set it is
        derived from. The package includes a number of functions used
        for plotting these probe level data as a function of location
        along sequences of mRNA-strands. This can be used for analysis
        of variable splicing, and is especially well suited for use
        with exon-array data.
License: GPL version 2 or newer
biocViews: Microarray, DataImport, Statistics, SNP, OneChannel,
        Visualization
Packaged: 2009-04-21 12:44:15 UTC; biocbuild
Built: R 2.9.0; ; 2009-04-21 15:56:47 UTC; windows
