# Linear Model Toolset for Gene Set Enrichment Analysis

## Documentation for package ‘GSEAlm’ version 1.4.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

CooksDPerGene | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
dfbetasPerGene | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
dffitsPerGene | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
getResidPerGene | Row-by-Row Linear-Model Residuals for Gene Expression (or similar) Data Structures
gsealmPerm | Nonparametric inference for linear models in Gene-Set-Enrichment Analysis (GSEA)
GSNormalize | Aggregating and calculating expression statistics by Gene Set
identity | Aggregating and calculating expression statistics by Gene Set
Leverage | Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
lmPerGene | Fit linear model for each gene
mnDiffPlot | Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA)
one | Aggregating and calculating expression statistics by Gene Set
resplot | Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA)
restrip | Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA)