\HeaderA{GGtools-package}{GGtools Package Overview}{GGtools.Rdash.package}
\aliasA{GGtools}{GGtools-package}{GGtools}
\keyword{package}{GGtools-package}
\begin{Description}\relax
GGtools Package Overview
\end{Description}
\begin{Details}\relax
This package provides facilities for analyzing relationships
between gene expression distributions (singly or in groups)
and SNP genotype series (chromosome-specific or genome-wide).
The \code{\LinkA{gwSnpTests}{gwSnpTests}} method is the primary interface.

Important data classes in use: \code{\LinkA{smlSet-class}{smlSet.Rdash.class}},
\code{\LinkA{gwSnpScreenResult-class}{gwSnpScreenResult.Rdash.class}}, defined in GGBase package.

Main data sets: \code{\LinkA{hmceuB36.2021}{hmceuB36.2021}}, an excerpt based on
chromosomes 20 and 21, with genotypes for all phase II HapMap SNP
and full expression data for 90 CEU HapMap cohort members.

Introductory information is available from vignettes, type
\code{openVignette()}.

Full listing of documented articles is available in HTML view by
typing \code{help.start()} and selecting \code{GGtools} package from the
\code{Packages} menu or via \code{library(help="GGtools")}.
\end{Details}
\begin{Author}\relax
V. Carey
\end{Author}

