hbTestResults-class {GGtools} | R Documentation

## Class "hbTestResults" holds results of tests of association of expression levels with haplotype within haplotype block

### Description

Class "hbTestResults" holds results of tests of association of expression levels with haplotype within haplotype block

### Objects from the Class

Objects can be created by calls of the form `new("hbTestResults", ...)`.

### Slots

`hscores`:
  Object of class `"list"` series of haplo.stats:::haplo.score results for blocks
`locs`:
  Object of class `"numeric"` locations at which blocks were found (mean location within each block)
`chrnum`:
  Object of class `"chrnum"` chromosome being analyzed
`smlSetName`:
  Object of class `"character"` name of the `smlSet-class` harboring data in use
`rsid`:
  Object of class `"ANY"` can be a dbSNP id to use as an anchor, or a number constituting absolute chromosomal location at which blocks will be sought
`rad`:
  Object of class `"numeric"` radius in base pairs around the `rsid` to be searched for blocks
`ldStruc`:
  Object of class `"ANY"` the result of the mapLD:::mapLD function

### Methods

pvals
  `signature(x = "hbTestResults")`: extracts p-values for global score tests, one per block
locs
  `signature(x = "hbTestResults")`: extracts locations of haplotype blocks found (average SNP location within block)
hscores
  `signature(x = "hbTestResults")`: extracts `haplo.score` results as a list, for all blocks

### Author(s)

VJ Carey <stvjc@channing.harvard.edu>

### Examples

    showClass("hbTestResults")

[Package GGtools version 3.2.0 Index]