gsea.files {Agi4x44PreProcess} | R Documentation

## Creates files for GSEA

### Description

Creates data and phenotype files for GSEA http://www.broad.mit.edu/gsea

### Usage

    gsea.files(eset, targets, annotation.package)

### Arguments

`eset` | Expression Set object containing processed DATA
`annotation.package` | character specifying the AGI annotation package: 'hgug4112a.db','mgug4122a.db'
`targets` | data.frame with the targets structure

### Author(s)

Pedro Lopez-Romero

### Examples

    ## Not run:
            data(dd)
            data(targets)
            library(hgug4112a.db)
            selSNR=which(dd$genes$ControlType==0)
            dd.aux=dd[selSNR,]
            index=which(duplicated(dd.aux$genes$ProbeName)==FALSE)
            dd.aux=dd.aux[index,]
            eset.test=build.eset(dd.aux,targets,makePLOT=FALSE,
                    annotation.package="hgug4112a.db")

            gsea.files(eset.test,targets,annotation.package="hgug4112a.db")
    ## End(Not run)

[Package Agi4x44PreProcess version 1.4.0 Index]