build.eset {Agi4x44PreProcess} | R Documentation

## ExpressionSet object from a RGList

### Description

It creates an 'ExpressionSet' object from a 'RGList' containing unique ProbeNames

### Usage

    build.eset(RGlist, targets, makePLOT, annotation.package)

### Arguments

`RGlist` | An RGList containing normally the processed data
`targets` | data.frame with the targets structure
`makePLOT` | logical, if `TRUE` it makes a 'heatmap' with the 100 greater variance genes, a 'hierarchical cluster' with all the genes and a pca plot
`annotation.package` | a character specifying the AGI annotation package: 'hgug4112a.db','mgug4122a.db'

### Details

It creates an ExpressionSet object from a RGList. Usually this function is applied to an RGList object containing the processed data.

### Value

An ExpressionSet object

### Author(s)

Pedro Lopez-Romero

### See Also

`write.eset`

### Examples

    ## Not run:
            data(dd)
            data(targets)
            library(hgug4112a.db)
            selSNR=which(dd$genes$ControlType==0)
            dd.aux=dd[selSNR,]
            index=which(duplicated(dd.aux$genes$ProbeName)==FALSE)
            dd.aux=dd.aux[index,]
            eset.test=build.eset(dd.aux,targets,makePLOT=TRUE,
                    annotation.package="hgug4112a.db")

    ## End(Not run)

[Package Agi4x44PreProcess version 1.4.0 Index]