write.sgr                package:ACME                R Documentation

_W_r_i_t_e _A_f_f_y _I_G_B ._s_g_r _f_o_r_m_a_t _f_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     The affy Integrated Genome Browser (IGB) is a powerful, fast
     browser for genomic data.  The file format is simple (three
     columns: chromosome, location, and score) to generate.  This
     function will write the sgr files associated with a aGFFcalc
     object.  There will be either one or two files (default two)
     representing the raw data and the calculated data (which is output
     as -log10(val) for visualization purposes).

_U_s_a_g_e:

     write.sgr(agff, raw = TRUE, vals = TRUE, directory = ".")

_A_r_g_u_m_e_n_t_s:

    agff: An aGFFCalc object obtained after running do.aGFF.calc

     raw: Create a file for the raw data?

    vals: Create a file for the calculated p-values?

directory: Give a directory for storing the files

_A_u_t_h_o_r(_s):

     Sean Davis

_E_x_a_m_p_l_e_s:

     data(example.agff)
     write.sgr(example.agff)

