syn.net {minet} | R Documentation

## SynTReN Source Network

### Description

This is the true underlying network used to generate the dataset loaded by `data(syn.data)` - see `syn.data`.

### Usage

    data(syn.net)

### Format

`syn.net` is a boolean adjacency matrix representing an undirected graph of 50 nodes.

### Source

`syn.net` is the "yeast_nn.sif" source network from the SynTReN generator where all the variables/nodes not in `syn.data` were removed.

### References

Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, and Kathleen Marchal. Syntren : a generator of synthetic gene expression dataset for design and analysis of structure learning algorithms. BMC Bioinformatics, 2006.

### Examples

    data(syn.data)
    data(syn.net)
    mim <- build.mim(discretize(syn.data),estimator="mi.empirical")
    infered.net <- mrnet(mim)
    max(fscores(validate( infered.net, syn.net )))

[Package minet version 1.2.0 Index]