syn.data {minet} | R Documentation

## Simulated Gene Expression Data

### Description

Dataset containing 100 samples and 50 genes generated by the publicly available SynTReN generator using a yeast source network - see `syn.net`

### Usage

    data(syn.data)

### Format

`syn.data` is a data frame containing 100 rows and 50 columns. Each row contains a microarray experiment and each column contains a gene.

### Source

- SynTReN 1.1.3
- source network : yeast_nn.sif

  ### References

  Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, and Kathleen Marchal. Syntren : a generator of synthetic gene expression dataset for design and analysis of structure learning algorithms. BMC Bioinformatics, 2006.

  ### Examples

      data(syn.data)
      data(syn.net)
      syn.data <- discretize(syn.data)
      mim <- build.mim(syn.data)
      infered.net <- mrnet(mim)
      max(fscores(validate( infered.net, syn.net )))

  [Package minet version 1.2.0 Index]