getPMInfo {annotate} | R Documentation

## extract publication details and abstract from annotate::pubmed function output

### Description

extract publication details and abstract from annotate::pubmed function output

### Usage

    getPMInfo(x)

### Arguments

`x` | an object of class xmlDocument; assumed to be result of a pubmed() call

### Details

uses xmlDOMApply to extract and structure key features of the XML tree returned by annotate::pubmed()

### Value

a list with one element per pubmed id processed by pubmed. Each element of the list is in turn a list with elements for author list, title, journal info, and abstract text.

### Note

this should be turned into a method returning an instance of a formal class representing articles.

### Author(s)

Vince Carey <stvjc@channing.harvard.edu>

### Examples

    demo <- pubmed("11780146",
        "11886385", "11884611")
    getPMInfo(demo)

[Package annotate version 1.20.1 Index]