sort.arrayCGH             package:MANOR             R Documentation

_S_o_r_t _f_o_r _n_o_r_m_a_l_i_z_e_d _a_r_r_a_y_C_G_H _o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Sorts clone-level information of a normalized arrayCGH object.

_U_s_a_g_e:

       ## S3 method for class 'arrayCGH':
       sort(x, decreasing = FALSE, position.var="Position",
         chromosome.var="Chromosome", ...)

_A_r_g_u_m_e_n_t_s:

       x: an object of type 'arrayCGH'.

decreasing: (for compatibility with 'sort' class) currently unused.

position.var: name of position variable.

chromosome.var: name of chromosome variable.

     ...: further arguments to be passed to 'sort'.

_N_o_t_e:

     People interested in tools for array-CGH analysis can visit our
     web-page: <URL: http://bioinfo.curie.fr>.

_A_u_t_h_o_r(_s):

     Pierre Neuvial, manor@curie.fr.

_S_e_e _A_l_s_o:

     'norm.arrayCGH'

_E_x_a_m_p_l_e_s:

     data(spatial)

     ## sort a normalized array by clone position
     gradient.norm <- sort.arrayCGH(gradient.norm)

     report.plot(gradient.norm, main="Genomic profile after normalization")

