\HeaderA{samplePointMatrix-class}{Sample point matrix}{samplePointMatrix.Rdash.class}
\aliasA{show,samplePointMatrix-method}{samplePointMatrix-class}{show,samplePointMatrix.Rdash.method}
\keyword{classes}{samplePointMatrix-class}
\begin{Description}\relax
A sample point matrix resulting from a call to calcSpm
\end{Description}
\begin{Section}{Objects from the Class}
Objects can not be created by the user directly but rather through calcSpm.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{totalLength}:] The total length of the sample point matrix, measures in sample points
\item[\code{maxy}:] The maximum KC score attained over the sample point matrix 
\item[\code{miny}:] The minimum KC score attained over the sample point matrix 
\item[\code{sampleDensity}:] The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs. 
\item[\code{sigma}:] The sigma used for the kernel to calculate the sample point matrix.
\item[\code{mirrorLocs}:] The mirror locations list used to calculate the sample point matrix
\item[\code{probeAnnotation}:] The original probe annotation from the input data.
\item[\code{data}:] The sample point matrix data points in the form of a list where each list element represents a chromosome.
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[plot] \code{signature(x = "samplePointMatrix")}: ... 
\item[show] \code{signature(object = "samplePointMatrix")}: ... 
}
\end{Section}
\begin{Examples}
\begin{ExampleCode}
showClass("samplePointMatrix")
\end{ExampleCode}
\end{Examples}

