samplePointMatrix-class {KCsmart} | R Documentation

## Sample point matrix

### Description

A sample point matrix resulting from a call to calcSpm

### Objects from the Class

Objects can not be created by the user directly but rather through calcSpm.

### Slots

`totalLength`:
  The total length of the sample point matrix, measures in sample points
`maxy`:
  The maximum KC score attained over the sample point matrix
`miny`:
  The minimum KC score attained over the sample point matrix
`sampleDensity`:
  The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.
`sigma`:
  The sigma used for the kernel to calculate the sample point matrix.
`mirrorLocs`:
  The mirror locations list used to calculate the sample point matrix
`probeAnnotation`:
  The original probe annotation from the input data.
`data`:
  The sample point matrix data points in the form of a list where each list element represents a chromosome.

### Methods

plot
  `signature(x = "samplePointMatrix")`: ...
show
  `signature(object = "samplePointMatrix")`: ...

### Examples

    showClass("samplePointMatrix")

[Package KCsmart version 1.6.0 Index]