hbTestResults-class         package:GGtools         R Documentation

_C_l_a_s_s "_h_b_T_e_s_t_R_e_s_u_l_t_s" _h_o_l_d_s _r_e_s_u_l_t_s _o_f _t_e_s_t_s
_o_f _a_s_s_o_c_i_a_t_i_o_n _o_f _e_x_p_r_e_s_s_i_o_n _l_e_v_e_l_s _w_i_t_h
_h_a_p_l_o_t_y_p_e _w_i_t_h_i_n _h_a_p_l_o_t_y_p_e _b_l_o_c_k

_D_e_s_c_r_i_p_t_i_o_n:

     Class "hbTestResults" holds results of tests of association of
     expression levels with haplotype within haplotype block

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("hbTestResults",
     ...)'.

_S_l_o_t_s:


     '_h_s_c_o_r_e_s': Object of class '"list"' series of
          haplo.stats:::haplo.score results for blocks  

     '_l_o_c_s': Object of class '"numeric"' locations at which blocks were
          found (mean location within each block) 

     '_c_h_r_n_u_m': Object of class '"chrnum"' chromosome being analyzed 

     '_s_m_l_S_e_t_N_a_m_e': Object of class '"character"' name of the smlSet
          harboring data in use 

     '_r_s_i_d': Object of class '"ANY"' can be a dbSNP id to use as an
          anchor, or a number constituting absolute chromosomal
          location at which blocks will be sought 

     '_r_a_d': Object of class '"numeric"' radius in base pairs around the
          'rsid' to be searched for blocks 

     '_l_d_S_t_r_u_c': Object of class '"ANY"' the result of the mapLD:::mapLD
          function 

_M_e_t_h_o_d_s:


     _p_v_a_l_s 'signature(x = "hbTestResults")': extracts p-values for
          global score tests, one per block 

     _l_o_c_s 'signature(x = "hbTestResults")': extracts locations of
          haplotype blocks found  (average SNP location within block) 

     _h_s_c_o_r_e_s 'signature(x = "hbTestResults")': extracts 'haplo.score'
          results as a list, for all blocks

_A_u_t_h_o_r(_s):

     VJ Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     showClass("hbTestResults")

