\HeaderA{hbTestResults-class}{Class "hbTestResults" holds results of tests
of association of expression levels with
haplotype within haplotype block}{hbTestResults.Rdash.class}
\aliasA{hscores}{hbTestResults-class}{hscores}
\aliasA{hscores,hbTestResults-method}{hbTestResults-class}{hscores,hbTestResults.Rdash.method}
\aliasA{locs}{hbTestResults-class}{locs}
\aliasA{locs,hbTestResults-method}{hbTestResults-class}{locs,hbTestResults.Rdash.method}
\aliasA{pvals}{hbTestResults-class}{pvals}
\aliasA{pvals,hbTestResults-method}{hbTestResults-class}{pvals,hbTestResults.Rdash.method}
\keyword{classes}{hbTestResults-class}
\begin{Description}\relax
Class "hbTestResults" holds results of tests
of association of expression levels with
haplotype within haplotype block
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("hbTestResults", ...)}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{hscores}:] Object of class \code{"list"} series of
haplo.stats:::haplo.score results for blocks  
\item[\code{locs}:] Object of class \code{"numeric"} locations
at which blocks were found (mean location within each block) 
\item[\code{chrnum}:] Object of class \code{"chrnum"} chromosome
being analyzed 
\item[\code{smlSetName}:] Object of class \code{"character"} name
of the smlSet harboring data in use 
\item[\code{rsid}:] Object of class \code{"ANY"} can be
a dbSNP id to use as an anchor, or a number constituting
absolute chromosomal location at which blocks will be
sought 
\item[\code{rad}:] Object of class \code{"numeric"} radius
in base pairs around the \code{rsid} to be searched for blocks 
\item[\code{ldStruc}:] Object of class \code{"ANY"} the result
of the mapLD:::mapLD function 
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[pvals] \code{signature(x = "hbTestResults")}: extracts
p-values for global score tests, one per block 
\item[locs] \code{signature(x = "hbTestResults")}: extracts
locations of haplotype blocks found  (average SNP location within block) 
\item[hscores] \code{signature(x = "hbTestResults")}: extracts
\code{\LinkA{haplo.score}{haplo.score}} results as a list, for all blocks
}
\end{Section}
\begin{Author}\relax
VJ Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
showClass("hbTestResults")
\end{ExampleCode}
\end{Examples}

