\HeaderA{snpLocs.Hs}{SNP location accessor}{snpLocs.Hs}
\aliasA{getSnpLocs}{snpLocs.Hs}{getSnpLocs}
\aliasA{getSnpLocs,smlSet,chrnum-method}{snpLocs.Hs}{getSnpLocs,smlSet,chrnum.Rdash.method}
\aliasA{getSnpLocs,smlSet,missing-method}{snpLocs.Hs}{getSnpLocs,smlSet,missing.Rdash.method}
\aliasA{hsSnpLocs}{snpLocs.Hs}{hsSnpLocs}
\aliasA{show,snpLocs-method}{snpLocs.Hs}{show,snpLocs.Rdash.method}
\aliasA{snpLocs-class}{snpLocs.Hs}{snpLocs.Rdash.class}
\aliasA{snpLocs.Hs,chrnum,missing-method}{snpLocs.Hs}{snpLocs.Hs,chrnum,missing.Rdash.method}
\aliasA{snpLocs.Hs,chrnum,rsid-method}{snpLocs.Hs}{snpLocs.Hs,chrnum,rsid.Rdash.method}
\aliasA{snpLocs.Hs,chrnum.missing-method}{snpLocs.Hs}{snpLocs.Hs,chrnum.missing.Rdash.method}
\aliasA{snpLocs.Hs,chrnum.rsid-method}{snpLocs.Hs}{snpLocs.Hs,chrnum.rsid.Rdash.method}
\aliasA{snpLocs.Hs,missing,rsid-method}{snpLocs.Hs}{snpLocs.Hs,missing,rsid.Rdash.method}
\aliasA{snpLocs.Hs,missing,rsid-method}{snpLocs.Hs}{snpLocs.Hs,missing,rsid.Rdash.method}
\aliasA{snpLocs.Hs,rsid,ANY-method}{snpLocs.Hs}{snpLocs.Hs,rsid,ANY.Rdash.method}
\aliasA{snpLocs.Hs,rsid-method}{snpLocs.Hs}{snpLocs.Hs,rsid.Rdash.method}
\aliasA{snpLocs.Hs,sid,ANY-method}{snpLocs.Hs}{snpLocs.Hs,sid,ANY.Rdash.method}
\keyword{models}{snpLocs.Hs}
\begin{Description}\relax
SNP location accessor
\end{Description}
\begin{Usage}
\begin{verbatim}
snpLocs.Hs(cnum, rsid)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{cnum}] chrnum instance indicating chromosome
\item[\code{rsid}] rsid instance giving dbSNP ids for snps of interest
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
The SNPlocs.Hsapiens.dbSNP.* package is curated
by Bioconductor and maintains location and allele
information on SNP.

The hsSnpLocs environment is available through data(hsSnpLocs),
and contains a unified representation of the information in
the SNPlocs package (which is only available through various
chromosome-specific calls).
\end{Details}
\begin{Value}
two-row matrix -- top row is numeric suffix of
dbSNP ids, bottom row is location, genome-wide if chrnum is
missing
\end{Value}
\begin{Author}\relax
Vince Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
library(GGtools)
data(hmceuB36.2021)
nn21 = colnames(smList(hmceuB36.2021)[["21"]])
length(nn21)
ss = snpLocs.Hs(chrnum(21), rsid(nn21))
dim(ss)
# notes that the locations available are not completely
# congruent with those asserted in HapMap data
\end{ExampleCode}
\end{Examples}

