filter.control {Agi4x44PreProcess} | R Documentation

## filter.probes (Internal function)

### Description

An internal function to be used by `filter.probes` An internal function to be used by `CV.rep.probes`

### Usage

    filter.control(ddNORM, ManuelaGO, targets, annotation.package)

### Arguments

`ddNORM` | an RGlist object
`ManuelaGO` | logical, if a known annotation package is available then it is `TRUE`
`targets` | data.frame with the target structure
`annotation.package` | a character specifying the AGI annotation package: 'hgug4112a.db','mgug4122a.db'

### Details

It eliminates the array internal controls

### Value

An RGlist with the internal controls filtered out It also writes an output file (RawDataNOCtrl.txt) that contains the data set with the controls filtered out and an output file (RawDataNOCtrlWABKGandISF.txt) that contains the data with the flags 'wellAboveBG' and 'IsFound'. This flags both take the value =1 if the signal is well above BG and Is found respectively. See 'filter.wellaboveBG' and 'filter.probes'

### Author(s)

Pedro Lopez-Romero

### See Also

`filter.probes`

### Examples

    ## Not run:
            data(dd)
            data(targets)
            library(hgug4112a.db)
            ddFILT=filter.control(dd,TRUE,targets,"hgug4112a.db")
            dim(ddFILT)

    ## End(Not run)

[Package Agi4x44PreProcess version 1.2.0 Index]