# Estimation of local false discovery rate

## Documentation for package ‘twilight’ version 1.16.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

exfdr | Example of twilight result
expval | Example of twilight.pval result
plot.twilight | Plot function for twilight objects
print.twilight | Print function for twilight objects
twilight | Estimation of the local false discovery rate
twilight.combi | All permutations of a binary vector
twilight.filtering | Permutation filtering
twilight.permute.pair | Permutation matrix of paired class labels
twilight.permute.unpair | Permutation matrix of unpaired class labels
twilight.pval | Compute p-values from expression sets
twilight.teststat | Interface to the test statistics provided within 'twilight'