classicScore-class {topGO} | R Documentation

## Class "classicScore"

### Description

TODO: A class that extends the virtual class groupStats by adding a slot representing the score of each gene. (used for KS test)

### Objects from the Class

Objects can be created by calls of the form `new("classicScore", testStatistic, name, allMembers, groupMembers, score, decreasing)`. ~~ describe objects here ~~

### Slots

`score`:
  Object of class `"numeric"` ~~
`name`:
  Object of class `"character"` ~~
`allMembers`:
  Object of class `"character"` ~~
`members`:
  Object of class `"character"` ~~
`testStatistic`:
  Object of class `"function"` ~~

### Extends

Class `"groupStats"`, directly.

### Methods

allScore
  Method to obtain the score of all members.
scoreOrder
  Returns TRUE if the score should be ordered increasing, FALSE otherwise.
membersScore
  `signature(object = "classicScore")`: ...
rankMembers
  `signature(object = "classicScore")`: ...
score<-
  `signature(object = "classicScore")`: ...

### Author(s)

Adrian Alexa

### See Also

`classicCount-class`, `groupStats-class`, `getSigGroups-methods`

### Examples

    ## define the type of test you want to use
    test.stat <- new("classicScore", testStatistic = GOKSTest, name = "KS tests")

[Package topGO version 1.8.1 Index]