snpMatrix-package	snpMatrix-package
Asnps	testdata
Autosomes	testdata
cbind	snp.cbind
cbind,snp.matrix-method	snp.matrix-class
cbind2	snp.cbind
cbind2,snp.matrix,snp.matrix-method	snp.matrix-class
coerce,matrix,snp.matrix-method	snp.matrix-class
coerce,snp,character-method	snp-class
coerce,snp,genotype-method	snp-class
coerce,snp,numeric-method	snp-class
coerce,snp.matrix,character-method	snp.matrix-class
coerce,snp.matrix,numeric-method	snp.matrix-class
coerce,snp.matrix,X.snp.matrix-method	X.snp.matrix-class
coerce,X.snp,character-method	X.snp-class
coerce,X.snp,genotype-method	X.snp-class
coerce,X.snp,numeric-method	X.snp-class
coerce,X.snp.matrix,character-method	X.snp.matrix-class
epsout.ld.snp	epsout.ld.snp
for.exercise	for.exercise
genotype-class	snpMatrix-internal
glm.test.control	glm.test.control
haplotype-class	snpMatrix-internal
ibs.stats	ibs.stats
ibsCount	ibsCount
ibsDist	ibsDist
initialize,snp.matrix-method	snp.matrix-class
initialize,X.snp.matrix-method	X.snp.matrix-class
is.na,snp.matrix-method	snp.matrix-class
ld.snp	ld.snp
ld.with	ld.with
ld.with,snp.matrix,character-method	ld.with
niceprint	snp.dprime-class
pair.result.ld.snp	pair.result.ld.snp
plot.snp.dprime	plot.snp.dprime
print.snp.dprime	snp.dprime-class
qq.chisq	qq.chisq
rbind	snp.cbind
rbind,snp.matrix-method	snp.matrix-class
rbind2	snp.cbind
rbind2,snp.matrix,snp.matrix-method	snp.matrix-class
read.HapMap.data	read.HapMap.data
read.pedfile.info	read.pedfile.info
read.snps.chiamo	read.snps.chiamo
read.snps.long	read.snps.long
read.snps.long.old	read.snps.long.old
read.snps.pedfile	read.snps.pedfile
read.wtccc.signals	read.wtccc.signals
row.summary	row.summary
show,snp-method	snp-class
show,snp.matrix-method	snp.matrix-class
show,X.snp-method	X.snp-class
show,X.snp.matrix-method	X.snp.matrix-class
single.snp.tests	single.snp.tests
snp-class	snp-class
snp.cbind	snp.cbind
snp.cor	snp.cor
snp.dprime-class	snp.dprime-class
snp.lhs.tests	snp.lhs.tests
snp.matrix-class	snp.matrix-class
snp.post	snp.pre
snp.pre	snp.pre
snp.rbind	snp.cbind
snp.rhs.tests	snp.rhs.tests
snp.support	for.exercise
snpMatrix	snpMatrix-package
snps.10	for.exercise
subject.data	testdata
subject.support	for.exercise
summary,snp.matrix-method	snp.matrix-class
summary,X.snp.matrix-method	X.snp.matrix-class
testdata	testdata
write.snp.matrix	write.snp.matrix
wtccc.sample.list	wtccc.sample.list
X.snp-class	X.snp-class
X.snp.matrix-class	X.snp.matrix-class
Xchromosome	testdata
Xsnps	testdata
xxt	xxt
[,snp.matrix-method	snp.matrix-class
[,X.snp.matrix-method	X.snp.matrix-class
[<-,X.snp.matrix,ANY,ANY,X.snp.matrix-method	X.snp.matrix-class
