additionalGraphicalObjects	Layout-class
additionalGraphicalObjects,Layout-method	Layout-class
additionalGraphicalObjects<-	Layout-class
additionalGraphicalObjects<-,Layout-method	Layout-class
AlgebraicRule-class	AlgebraicRule-class
annotation	SBase-class
annotation,SBase-method	SBase-class
annotation<-	SBase-class
annotation<-,SBase-method	SBase-class
as.character.SBML	SBML-class
as.character.SBMLDocument	SBMLDocument-class
AssignmentRule-class	AssignmentRule-class
basePoint1	CubicBezier-class
basePoint1,CubicBezier-method	CubicBezier-class
basePoint1<-	CubicBezier-class
basePoint1<-,CubicBezier-method	CubicBezier-class
basePoint2	CubicBezier-class
basePoint2,CubicBezier-method	CubicBezier-class
basePoint2<-	CubicBezier-class
basePoint2<-,CubicBezier-method	CubicBezier-class
biologicalQualifierType	CVTerm-class
biologicalQualifierType,CVTerm-method	CVTerm-class
biologicalQualifierType<-	CVTerm-class
biologicalQualifierType<-,CVTerm-method	CVTerm-class
boundaryCondition	Species-class
boundaryCondition,Species-method	Species-class
boundaryCondition<-	Species-class
boundaryCondition<-,Species-method	Species-class
boundingBox	GraphicalObject-class
boundingBox,GraphicalObject-method	GraphicalObject-class
BoundingBox-class	BoundingBox-class
boundingBox<-	GraphicalObject-class
boundingBox<-,GraphicalObject-method	GraphicalObject-class
charge	Species-class
charge,Species-method	Species-class
charge<-	Species-class
charge<-,Species-method	Species-class
coerce	SBML-class
coerce,SBML,SBMLDocument-method	SBML-class
coerce,SBMLDocument,graph-method	SBMLDocument-class
coerce,SBMLDocument,SBML-method	SBMLDocument-class
compartment	Species-class
compartment,CompartmentGlyph-method	CompartmentGlyph-class
compartment,CompartmentVolumeRule-method	CompartmentVolumeRule-class
compartment,Species-method	Species-class
Compartment-class	Compartment-class
compartment<-	Species-class
compartment<-,CompartmentGlyph-method	CompartmentGlyph-class
compartment<-,CompartmentVolumeRule-method	CompartmentVolumeRule-class
compartment<-,Species-method	Species-class
CompartmentGlyph-class	CompartmentGlyph-class
compartmentGlyphs	Layout-class
compartmentGlyphs,Layout-method	Layout-class
compartmentGlyphs<-	Layout-class
compartmentGlyphs<-,Layout-method	Layout-class
compartments	Model-class
compartments,Model-method	Model-class
compartments<-	Model-class
compartments<-,Model-method	Model-class
CompartmentType-class	CompartmentType-class
compartmentTypes	Model-class
compartmentTypes,Model-method	Model-class
compartmentTypes<-	Model-class
compartmentTypes<-,Model-method	Model-class
CompartmentVolumeRule-class	CompartmentVolumeRule-class
constant	Species-class
constant,Compartment-method	Compartment-class
constant,Parameter-method	Parameter-class
constant,Species-method	Species-class
constant<-	Species-class
constant<-,Compartment-method	Compartment-class
constant<-,Parameter-method	Parameter-class
constant<-,Species-method	Species-class
Constraint-class	Constraint-class
constraints	Model-class
constraints,Model-method	Model-class
constraints<-	Model-class
constraints<-,Model-method	Model-class
createdDate	ModelHistory-class
createdDate,ModelHistory-method	ModelHistory-class
createdDate<-	ModelHistory-class
createdDate<-,ModelHistory,character-method	ModelHistory-class
createdDate<-,ModelHistory,POSIXt-method	ModelHistory-class
creators	ModelHistory-class
creators,ModelHistory-method	ModelHistory-class
creators<-	ModelHistory-class
creators<-,ModelHistory-method	ModelHistory-class
CubicBezier-class	CubicBezier-class
Curve-class	Curve-class
curveSegments	Curve-class
curveSegments,Curve-method	Curve-class
curveSegments<-	Curve-class
curveSegments<-,Curve-method	Curve-class
CVTerm-class	CVTerm-class
cvTerms	SBase-class
cvTerms,SBase-method	SBase-class
cvTerms<-	SBase-class
cvTerms<-,SBase-method	SBase-class
Delay-class	Delay-class
depth	Dimensions-class
depth,Dimensions-method	Dimensions-class
depth<-	Dimensions-class
depth<-,Dimensions-method	Dimensions-class
dimensions	Layout-class
dimensions,BoundingBox-method	BoundingBox-class
dimensions,Layout-method	Layout-class
Dimensions-class	Dimensions-class
dimensions<-	Layout-class
dimensions<-,BoundingBox-method	BoundingBox-class
dimensions<-,Layout-method	Layout-class
email	ModelCreator-class
email,ModelCreator-method	ModelCreator-class
email<-	ModelCreator-class
email<-,ModelCreator-method	ModelCreator-class
end	LineSegment-class
end,LineSegment-method	LineSegment-class
end<-	LineSegment-class
end<-,LineSegment-method	LineSegment-class
Event-class	Event-class
EventAssignment-class	EventAssignment-class
eventAssignments	Event-class
eventAssignments,Event-method	Event-class
eventAssignments<-	Event-class
eventAssignments<-,Event-method	Event-class
eventDelay	Event-class
eventDelay,Event-method	Event-class
eventDelay<-	Event-class
eventDelay<-,Event-method	Event-class
events	Model-class
events,Model-method	Model-class
events<-	Model-class
events<-,Model-method	Model-class
exponent	Unit-class
exponent,Unit-method	Unit-class
exponent<-	Unit-class
exponent<-,Unit-method	Unit-class
familyName	ModelCreator-class
familyName,ModelCreator-method	ModelCreator-class
familyName<-	ModelCreator-class
familyName<-,ModelCreator-method	ModelCreator-class
fast	Reaction-class
fast,Reaction-method	Reaction-class
fast<-	Reaction-class
fast<-,Reaction-method	Reaction-class
FunctionDefinition-class	FunctionDefinition-class
functionDefinitions	Model-class
functionDefinitions,Model-method	Model-class
functionDefinitions<-	Model-class
functionDefinitions<-,Model-method	Model-class
givenName	ModelCreator-class
givenName,ModelCreator-method	ModelCreator-class
givenName<-	ModelCreator-class
givenName<-,ModelCreator-method	ModelCreator-class
glyphCurve	ReactionGlyph-class
glyphCurve,ReactionGlyph-method	ReactionGlyph-class
glyphCurve,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
glyphCurve<-	ReactionGlyph-class
glyphCurve<-,ReactionGlyph-method	ReactionGlyph-class
glyphCurve<-,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
graphicalObject	TextGlyph-class
graphicalObject,TextGlyph-method	TextGlyph-class
GraphicalObject-class	GraphicalObject-class
graphicalObject<-	TextGlyph-class
graphicalObject<-,TextGlyph-method	TextGlyph-class
hasOnlySubstanceUnits	Species-class
hasOnlySubstanceUnits,Species-method	Species-class
hasOnlySubstanceUnits<-	Species-class
hasOnlySubstanceUnits<-,Species-method	Species-class
height	Dimensions-class
height,Dimensions-method	Dimensions-class
height<-	Dimensions-class
height<-,Dimensions-method	Dimensions-class
id	UnitDefinition-class
id,BoundingBox-method	BoundingBox-class
id,Compartment-method	Compartment-class
id,CompartmentType-method	CompartmentType-class
id,Event-method	Event-class
id,FunctionDefinition-method	FunctionDefinition-class
id,GraphicalObject-method	GraphicalObject-class
id,Layout-method	Layout-class
id,Model-method	Model-class
id,Parameter-method	Parameter-class
id,Reaction-method	Reaction-class
id,SimpleSpeciesReference-method	SimpleSpeciesReference-class
id,Species-method	Species-class
id,SpeciesType-method	SpeciesType-class
id,UnitDefinition-method	UnitDefinition-class
id<-	UnitDefinition-class
id<-,BoundingBox-method	BoundingBox-class
id<-,Compartment-method	Compartment-class
id<-,CompartmentType-method	CompartmentType-class
id<-,Event-method	Event-class
id<-,FunctionDefinition-method	FunctionDefinition-class
id<-,GraphicalObject-method	GraphicalObject-class
id<-,Layout-method	Layout-class
id<-,Model-method	Model-class
id<-,Parameter-method	Parameter-class
id<-,Reaction-method	Reaction-class
id<-,SimpleSpeciesReference-method	SimpleSpeciesReference-class
id<-,Species-method	Species-class
id<-,SpeciesType-method	SpeciesType-class
id<-,UnitDefinition-method	UnitDefinition-class
initialAmount	Species-class
initialAmount,Species-method	Species-class
initialAmount<-	Species-class
initialAmount<-,Species-method	Species-class
InitialAssignment-class	InitialAssignment-class
initialAssignments	Model-class
initialAssignments,Model-method	Model-class
initialAssignments<-	Model-class
initialAssignments<-,Model-method	Model-class
initialConcentration	Species-class
initialConcentration,Species-method	Species-class
initialConcentration<-	Species-class
initialConcentration<-,Species-method	Species-class
kind	Unit-class
kind,Unit-method	Unit-class
kind<-	Unit-class
kind<-,Unit-method	Unit-class
kineticLaw	Reaction-class
kineticLaw,Reaction-method	Reaction-class
KineticLaw-class	KineticLaw-class
kineticLaw<-	Reaction-class
kineticLaw<-,Reaction-method	Reaction-class
Layout-class	Layout-class
layouts	Model-class
layouts,Model-method	Model-class
layouts<-	Model-class
layouts<-,Model-method	Model-class
level	SBML-class
level,SBML-method	SBML-class
level<-	SBML-class
level<-,SBML-method	SBML-class
LineSegment-class	LineSegment-class
math	KineticLaw-class
math,Constraint-method	Constraint-class
math,Delay-method	Delay-class
math,EventAssignment-method	EventAssignment-class
math,FunctionDefinition-method	FunctionDefinition-class
math,InitialAssignment-method	InitialAssignment-class
math,KineticLaw-method	KineticLaw-class
math,ParameterRule-method	ParameterRule-class
math,Rule-method	Rule-class
math,StoichiometryMath-method	StoichiometryMath-class
math,Trigger-method	Trigger-class
math<-	KineticLaw-class
math<-,Constraint-method	Constraint-class
math<-,Delay-method	Delay-class
math<-,EventAssignment-method	EventAssignment-class
math<-,FunctionDefinition-method	FunctionDefinition-class
math<-,InitialAssignment-method	InitialAssignment-class
math<-,KineticLaw-method	KineticLaw-class
math<-,ParameterRule-method	ParameterRule-class
math<-,Rule-method	Rule-class
math<-,StoichiometryMath-method	StoichiometryMath-class
math<-,Trigger-method	Trigger-class
message,Constraint-method	Constraint-class
message<-	Constraint-class
message<-,Constraint-method	Constraint-class
metaId	SBase-class
metaId,SBase-method	SBase-class
metaId<-	SBase-class
metaId<-,SBase-method	SBase-class
model	SBML-class
model,SBML-method	SBML-class
Model-class	Model-class
model<-	SBML-class
model<-,SBML-method	SBML-class
ModelCreator-class	ModelCreator-class
modelHistory	Model-class
modelHistory,Model-method	Model-class
ModelHistory-class	ModelHistory-class
modelHistory<-	Model-class
modelHistory<-,Model-method	Model-class
modelQualifierType	CVTerm-class
modelQualifierType,CVTerm-method	CVTerm-class
modelQualifierType<-	CVTerm-class
modelQualifierType<-,CVTerm-method	CVTerm-class
modifiedDate	ModelHistory-class
modifiedDate,ModelHistory-method	ModelHistory-class
modifiedDate<-	ModelHistory-class
modifiedDate<-,ModelHistory,character-method	ModelHistory-class
modifiedDate<-,ModelHistory,POSIXt-method	ModelHistory-class
modifiedDate<-,ModelHistory-method	ModelHistory-class
modifiers	Reaction-class
modifiers,Reaction-method	Reaction-class
modifiers<-	Reaction-class
modifiers<-,Reaction-method	Reaction-class
ModifierSpeciesReference-class	ModifierSpeciesReference-class
multiplier	Unit-class
multiplier,Unit-method	Unit-class
multiplier<-	Unit-class
multiplier<-,Unit-method	Unit-class
name	UnitDefinition-class
name,Compartment-method	Compartment-class
name,CompartmentType-method	CompartmentType-class
name,Event-method	Event-class
name,FunctionDefinition-method	FunctionDefinition-class
name,Model-method	Model-class
name,Parameter-method	Parameter-class
name,ParameterRule-method	ParameterRule-class
name,Reaction-method	Reaction-class
name,Species-method	Species-class
name,SpeciesType-method	SpeciesType-class
name,UnitDefinition-method	UnitDefinition-class
name<-	UnitDefinition-class
name<-,Compartment-method	Compartment-class
name<-,CompartmentType-method	CompartmentType-class
name<-,Event-method	Event-class
name<-,FunctionDefinition-method	FunctionDefinition-class
name<-,Model-method	Model-class
name<-,Parameter-method	Parameter-class
name<-,ParameterRule-method	ParameterRule-class
name<-,Reaction-method	Reaction-class
name<-,Species-method	Species-class
name<-,SpeciesType-method	SpeciesType-class
name<-,UnitDefinition-method	UnitDefinition-class
notes	SBase-class
notes,SBase-method	SBase-class
notes<-	SBase-class
notes<-,SBase-method	SBase-class
offset	Unit-class
offset,Unit-method	Unit-class
offset<-	Unit-class
offset<-,Unit-method	Unit-class
organization	ModelCreator-class
organization,ModelCreator-method	ModelCreator-class
organization<-	ModelCreator-class
organization<-,ModelCreator-method	ModelCreator-class
originOfText	TextGlyph-class
originOfText,TextGlyph-method	TextGlyph-class
originOfText<-	TextGlyph-class
originOfText<-,TextGlyph-method	TextGlyph-class
outside	Compartment-class
outside,Compartment-method	Compartment-class
outside<-	Compartment-class
outside<-,Compartment-method	Compartment-class
Parameter-class	Parameter-class
ParameterRule-class	ParameterRule-class
parameters	Model-class
parameters,KineticLaw-method	KineticLaw-class
parameters,Model-method	Model-class
parameters<-	Model-class
parameters<-,KineticLaw-method	KineticLaw-class
parameters<-,Model-method	Model-class
Point-class	Point-class
position	BoundingBox-class
position,BoundingBox-method	BoundingBox-class
position<-	BoundingBox-class
position<-,BoundingBox-method	BoundingBox-class
products	Reaction-class
products,Reaction-method	Reaction-class
products<-	Reaction-class
products<-,Reaction-method	Reaction-class
qualifierType	CVTerm-class
qualifierType,CVTerm-method	CVTerm-class
qualifierType<-	CVTerm-class
qualifierType<-,CVTerm-method	CVTerm-class
RateRule-class	RateRule-class
reactants	Reaction-class
reactants,Reaction-method	Reaction-class
reactants<-	Reaction-class
reactants<-,Reaction-method	Reaction-class
reaction	ReactionGlyph-class
reaction,ReactionGlyph-method	ReactionGlyph-class
Reaction-class	Reaction-class
reaction<-	ReactionGlyph-class
reaction<-,ReactionGlyph-method	ReactionGlyph-class
ReactionGlyph-class	ReactionGlyph-class
reactionGlyphs	Layout-class
reactionGlyphs,Layout-method	Layout-class
reactionGlyphs<-	Layout-class
reactionGlyphs<-,Layout-method	Layout-class
reactions	Model-class
reactions,Model-method	Model-class
reactions<-	Model-class
reactions<-,Model-method	Model-class
resources	CVTerm-class
resources,CVTerm-method	CVTerm-class
resources<-	CVTerm-class
resources<-,CVTerm-method	CVTerm-class
reversible	Reaction-class
reversible,Reaction-method	Reaction-class
reversible<-	Reaction-class
reversible<-,Reaction-method	Reaction-class
role	SpeciesReferenceGlyph-class
role,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
role<-	SpeciesReferenceGlyph-class
role<-,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
rsbml_check	SBMLDocument-class
rsbml_check,SBMLDocument-method	SBMLDocument-class
rsbml_doc	SBML-class
rsbml_doc,SBML-method	SBML-class
rsbml_dom	SBMLDocument-class
rsbml_dom,SBMLDocument-method	SBMLDocument-class
rsbml_graph	SBMLDocument-class
rsbml_graph,SBMLDocument-method	SBMLDocument-class
rsbml_problems	SBMLDocument-class
rsbml_problems,SBMLDocument-method	SBMLDocument-class
rsbml_read	read
rsbml_write	SBML-class
rsbml_write,SBML-method	SBML-class
rsbml_write,SBMLDocument-method	SBMLDocument-class
rsbml_xml	SBML-class
rsbml_xml,SBML-method	SBML-class
rsbml_xml,SBMLDocument-method	SBMLDocument-class
Rule-class	Rule-class
rules	Model-class
rules,Model-method	Model-class
rules<-	Model-class
rules<-,Model-method	Model-class
SBase-class	SBase-class
SBML-class	SBML-class
SBMLDocument-class	SBMLDocument-class
sboTerm	SBase-class
sboTerm,SBase-method	SBase-class
sboTerm<-	SBase-class
sboTerm<-,SBase-method	SBase-class
SimpleSpeciesReference-class	SimpleSpeciesReference-class
size	Compartment-class
size,Compartment-method	Compartment-class
size<-	Compartment-class
size<-,Compartment-method	Compartment-class
spatialDimensions	Compartment-class
spatialDimensions,Compartment-method	Compartment-class
spatialDimensions<-	Compartment-class
spatialDimensions<-,Compartment-method	Compartment-class
spatialSizeUnits	Species-class
spatialSizeUnits,Species-method	Species-class
spatialSizeUnits<-	Species-class
spatialSizeUnits<-,Species-method	Species-class
species	SpeciesGlyph-class
species,Model-method	Model-class
species,SimpleSpeciesReference-method	SimpleSpeciesReference-class
species,SpeciesConcentrationRule-method	SpeciesConcentrationRule-class
species,SpeciesGlyph-method	SpeciesGlyph-class
Species-class	Species-class
species<-	SpeciesGlyph-class
species<-,Model-method	Model-class
species<-,SimpleSpeciesReference-method	SimpleSpeciesReference-class
species<-,SpeciesConcentrationRule-method	SpeciesConcentrationRule-class
species<-,SpeciesGlyph-method	SpeciesGlyph-class
SpeciesConcentrationRule-class	SpeciesConcentrationRule-class
speciesGlyph	SpeciesReferenceGlyph-class
speciesGlyph,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
SpeciesGlyph-class	SpeciesGlyph-class
speciesGlyph<-	SpeciesReferenceGlyph-class
speciesGlyph<-,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
speciesGlyphs	Layout-class
speciesGlyphs,Layout-method	Layout-class
speciesGlyphs<-	Layout-class
speciesGlyphs<-,Layout-method	Layout-class
speciesReference	SpeciesReferenceGlyph-class
speciesReference,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
SpeciesReference-class	SpeciesReference-class
speciesReference<-	SpeciesReferenceGlyph-class
speciesReference<-,SpeciesReferenceGlyph-method	SpeciesReferenceGlyph-class
SpeciesReferenceGlyph-class	SpeciesReferenceGlyph-class
speciesReferenceGlyphs	ReactionGlyph-class
speciesReferenceGlyphs,ReactionGlyph-method	ReactionGlyph-class
speciesReferenceGlyphs<-	ReactionGlyph-class
speciesReferenceGlyphs<-,ReactionGlyph-method	ReactionGlyph-class
SpeciesType-class	SpeciesType-class
speciesTypes	Model-class
speciesTypes,Model-method	Model-class
speciesTypes<-	Model-class
speciesTypes<-,Model-method	Model-class
start	LineSegment-class
start,LineSegment-method	LineSegment-class
start<-	LineSegment-class
start<-,LineSegment-method	LineSegment-class
stoichiometry	SpeciesReference-class
stoichiometry,SpeciesReference-method	SpeciesReference-class
stoichiometry<-	SpeciesReference-class
stoichiometry<-,SpeciesReference-method	SpeciesReference-class
stoichiometryMath	SpeciesReference-class
stoichiometryMath,SpeciesReference-method	SpeciesReference-class
StoichiometryMath-class	StoichiometryMath-class
stoichiometryMath<-	SpeciesReference-class
stoichiometryMath<-,SpeciesReference-method	SpeciesReference-class
substanceUnits	KineticLaw-class
substanceUnits,KineticLaw-method	KineticLaw-class
substanceUnits,Species-method	Species-class
substanceUnits<-	KineticLaw-class
substanceUnits<-,KineticLaw-method	KineticLaw-class
substanceUnits<-,Species-method	Species-class
symbol	InitialAssignment-class
symbol,InitialAssignment-method	InitialAssignment-class
symbol<-	InitialAssignment-class
symbol<-,InitialAssignment-method	InitialAssignment-class
text	TextGlyph-class
text,TextGlyph-method	TextGlyph-class
text<-	TextGlyph-class
text<-,TextGlyph-method	TextGlyph-class
TextGlyph-class	TextGlyph-class
textGlyphs	Layout-class
textGlyphs,Layout-method	Layout-class
textGlyphs<-	Layout-class
textGlyphs<-,Layout-method	Layout-class
timeUnits	KineticLaw-class
timeUnits,Event-method	Event-class
timeUnits,KineticLaw-method	KineticLaw-class
timeUnits<-	KineticLaw-class
timeUnits<-,Event-method	Event-class
timeUnits<-,KineticLaw-method	KineticLaw-class
trigger	Event-class
trigger,Event-method	Event-class
Trigger-class	Trigger-class
trigger<-	Event-class
trigger<-,Event-method	Event-class
type	AssignmentRule-class
type,AssignmentRule-method	AssignmentRule-class
type,ParameterRule-method	ParameterRule-class
type<-	AssignmentRule-class
type<-,AssignmentRule-method	AssignmentRule-class
type<-,ParameterRule-method	ParameterRule-class
Unit-class	Unit-class
UnitDefinition-class	UnitDefinition-class
unitDefinitions	Model-class
unitDefinitions,Model-method	Model-class
unitDefinitions<-	Model-class
unitDefinitions<-,Model-method	Model-class
units	UnitDefinition-class
units,Compartment-method	Compartment-class
units,Parameter-method	Parameter-class
units,ParameterRule-method	ParameterRule-class
units,Species-method	Species-class
units,UnitDefinition-method	UnitDefinition-class
units<-	UnitDefinition-class
units<-,Compartment-method	Compartment-class
units<-,Parameter-method	Parameter-class
units<-,ParameterRule-method	ParameterRule-class
units<-,Species-method	Species-class
units<-,UnitDefinition-method	UnitDefinition-class
unitScale	Unit-class
unitScale,Unit-method	Unit-class
unitScale<-	Unit-class
unitScale<-,Unit-method	Unit-class
value	Parameter-class
value,Parameter-method	Parameter-class
value<-	Parameter-class
value<-,Parameter-method	Parameter-class
variable	RateRule-class
variable,AssignmentRule-method	AssignmentRule-class
variable,EventAssignment-method	EventAssignment-class
variable,ParameterRule-method	ParameterRule-class
variable,RateRule-method	RateRule-class
variable<-	RateRule-class
variable<-,AssignmentRule-method	AssignmentRule-class
variable<-,EventAssignment-method	EventAssignment-class
variable<-,ParameterRule-method	ParameterRule-class
variable<-,RateRule-method	RateRule-class
ver	SBML-class
ver,SBML-method	SBML-class
ver<-	SBML-class
ver<-,SBML-method	SBML-class
width	Dimensions-class
width,Dimensions-method	Dimensions-class
width<-	Dimensions-class
width<-,Dimensions-method	Dimensions-class
x	Point-class
x,Point-method	Point-class
x<-	Point-class
x<-,Point-method	Point-class
y	Point-class
y,Point-method	Point-class
y<-	Point-class
y<-,Point-method	Point-class
z	Point-class
z,Point-method	Point-class
z<-	Point-class
z<-,Point-method	Point-class
