ooMapLL2GOMFdemo          package:ontoTools          R Documentation

_o_b_j_e_c_t-_t_e_r_m _m_a_p_p_i_n_g _f_o_r _h_u_m_a_n _l_o_c_u_s_l_i_n_k _e_n_t_r_i_e_s _a_n_d _G_O _M_F

_D_e_s_c_r_i_p_t_i_o_n:

     object-term mapping for human locuslink entries and GO MF

_U_s_a_g_e:

     data(ooMapLL2GOMFdemo)

_F_o_r_m_a_t:

     The format is: list() - attr(*, "Dimnames")=List of 2 ..$ : chr
     [1:10776] "1" "10" "100" "1000" ... ..$ : chr [1:5399]
     "GO:0000005" "GO:0000006" "GO:0000007" "GO:0000008" ... - attr(*,
     "mat")= list() ..- attr(*, "ra")= num [1:19679] 0 1 1 1 1 1 1 1 1
     1 ... ..- attr(*, "ja")= int [1:19679] 1 1842 541 3528 3753 485
     3799 1594 1804 1098 ... ..- attr(*, "ia")= int [1:10777] 1 3 6 8
     10 13 14 17 23 28 ... ..- attr(*, "dimension")= int [1:2] 10776
     5399 ..- attr(*, "class")= chr "matrix.csr" - attr(*,
     "rowindex")=List of 2 ..$ n2i:length 0 <environment> ..$
     i2n:length 0 <environment> - attr(*, "colindex")=List of 2 ..$
     n2i:length 0 <environment> ..$ i2n:length 0 <environment> -
     attr(*, "class")= chr "namedSparse"

_S_o_u_r_c_e:

     bioconductor GO, humanLLMapping and ontoTools otkv tools.

