read.dataset {genArise} | R Documentation

## Read Dataset from File

### Description

Read all file and extract the interested columns to create a DataSet object (this file contain the zscore with all the genes after the duplicates filtering and makes not distinction between up-regulated and down-regulated. If you want to make this distinction you must write the data with the function write.dataSet, but there is no way to read this files with this function).

### Usage

    read.dataset(file.name, cy3 = 1, cy5 = 2, ids = 3, symdesc = NULL,
    zscore = 4, type = 6, header = FALSE, sep = "\t")

### Arguments

`file.name` | a connection or a character string giving the name of the file to read where each column represent the dataset components.
`cy3` | column that represent Cy3.
`cy5` | column that represent Cy5.
`ids` | column that represent Id.
`symdesc` | optional identifier besides Id column.
`zscore` | column that represent the zscore value.
`type` | column that represent if the experiment was performed as R vs I or M vs A.
`header` | the logical value of the header input file
`sep` | the separator in the inputfile

### See Also

`write.zscore`.

[Package genArise version 1.16.0 Index]