bfile2tmat {cosmo} | R Documentation

## Converting a MEME-style background file to a transition matrix

### Description

bfile2tmat converts a MEME-style background file for specifiying the background Markov model into a transition matrix.

### Usage

      bfile2tmat(file)

### Arguments

`file` | The MEME-style background file.

### Value

The estimated transition matrix for the background Markov model. This is a list of matrices, with the first matrix given the transition probabilities for the 0th order Markov model, the second matrix giving the transition probabilities for a 1st order Markov model, and so on.

### Author(s)

Oliver Bembom, bembom@berkeley.edu

### See Also

`cosmo`, `bgModel`

### Examples

    ## path to example MEME-style background file
    bfile <- system.file("Exfiles","bfile",package="cosmo")

    tmat <- bfile2tmat(bfile)

[Package cosmo version 1.6.0 Index]