getEnVisionRawData {cellHTS} | R Documentation

## Read a plate file obtain from EnVision Plate Reader

### Description

Import functions to read a plate file obtained from EnVision Plate Reader. These functions should be set as the import function of `readPlateData` through the argument `importFun` when reading plate result files obtained from EnVision plate reader.

### Usage

    getEnVisionRawData(f)
    getEnVisionCrosstalkCorrectedData(f)

### Arguments

`f` | the name of the result plate file to read.

### Details

These functions should not be called directly. Instead, they should be set as the import function of `readPlateData` through the argument `importFun` when reading plate result files obtained from an EnVision plate reader.

### Value

These functions return a list with two components. The first component should be a 'data.frame' with the following slots: `well` (a character vector with the well identifier in the plate) and `val` (the intensity values measured at each well). The second component of this list should be a character vector containing a copy of the imported input data file (such as the output of `readLines`). It should be suitable to be used as input for `writeLines`, since it will be used to reproduce the intensity files that are linked in the HTML quality reports generated by `writeReport`.

### Author(s)

Ligia Bras ligia@ebi.ac.uk

### See Also

`readPlateData`

### Examples

        plateFile <- system.file("EnVisionExample/XXX_1500.csv", package = "cellHTS")
        onePlate <- getEnVisionRawData(plateFile)

       ## to get the cross talk corrected data:
       onePlate2 <- getEnVisionCrosstalkCorrectedData(plateFile)

[Package cellHTS version 1.10.0 Index]