# Parametric Gene Set Enrichment Analysis

## Documentation for package ‘PGSEA’ version 1.8.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

aggregateExprs | Aggregate expression data
convertSmc | Convert Entrez ID based "smc" object
editSmc | Edit "smc" objects
go2smc | Gene Ontology 2 "smc"
GOLUBmcs | Molecular Concepts prepared at VAI from data created by Golub et al.
kegg2smc | KEGG pathway to "smc"
nbEset | Reduced Neuroblastoma data set
PGSEA | Parametric Gene Set Enrichment Analysis
readGmt | readGmt
readSmc | Read SMC files
scanSmc | Scan through smc objects
smc-class | Read SMC files
smcPlot | Plot PGSEA results
VAIgsc | Molecular Concepts (Gene Sets) prepared at VAI
VAImcs | Molecular Concepts prepared at VAI
writeGmt | writeGmt
writeSmc | writeSmc